2V89

Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide at 1.1A resolution

Summary for 2V89

Related2V86 2V87 2A23 2V83 2V85 2V88
DescriptorVDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3, ZINC ION, ... (4 entities in total)
Functional Keywordsv(d)j recombination, covalent modifications, rag, histone, nucleus, nuclease, hydrolase, phd finger, dna-binding, recombinase, endonuclease, trimethyl lysine, dna recombination, protein binding
Biological sourceMUS MUSCULUS (HOUSE MOUSE)
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Total number of polymer chains4
Total molecular weight21163.22
Authors
Ramon-Maiques, S.,Yang, W. (deposition date: 2007-08-03, release date: 2007-12-11, Last modification date: 2019-05-08)
Primary citation
Matthews, A.G.W.,Kuo, A.J.,Ramon-Maiques, S.,Han, S.,Champagne, K.S.,Ivanov, D.,Gallardo, M.,Carney, D.,Cheung, P.,Ciccone, D.N.,Walter, K.L.,Utz, P.J.,Shi, Y.,Kutateladze, T.G.,Yang, W.,Gozani, O.,Oettinger, M.A.
Rag2 Phd Finger Couples Histone H3 Lysine 4 Trimethylation with V(D)J Recombination.
Nature, 450:1106-, 2007
PubMed: 18033247 (PDB entries with the same primary citation)
DOI: 10.1038/NATURE06431
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.1 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.1722 0.6% 0.7% 11.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

Molmil generated image of 2v89
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Molmil generated image of 2v89
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2v89.pdb1.gz [32.53 KB])
Coordinate files for Biological unit (2v89.pdb2.gz [30.17 KB])