2V5D
Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.
Summary for 2V5D
| Entry DOI | 10.2210/pdb2v5d/pdb |
| Related | 2J62 2JH2 2V5C 2VUR |
| Descriptor | O-GLCNACASE NAGJ, CALCIUM ION (3 entities in total) |
| Functional Keywords | family 32 carbohydrate binding module, glycosidase, clostridium perfringens, gh84, gh84c, cbm32, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module |
| Biological source | CLOSTRIDIUM PERFRINGENS |
| Total number of polymer chains | 1 |
| Total formula weight | 82446.03 |
| Authors | Ficko-Blean, E.,Gregg, K.J.,Adams, J.J.,Hehemann, J.H.,Smith, S.J.,Czjzek, M.,Boraston, A.B. (deposition date: 2008-10-02, release date: 2009-01-27, Last modification date: 2024-05-08) |
| Primary citation | Ficko-Blean, E.,Gregg, K.J.,Adams, J.J.,Hehemann, J.H.,Smith, S.J.,Czjzek, M.,Boraston, A.B. Portrait of an Enzyme: A Complete Structural Analysis of a Multi-Modular Beta-N-Acetylglucosaminidase from Clostridium Perfringens J.Biol.Chem., 284:9876-, 2009 Cited by PubMed Abstract: Common features of the extracellular carbohydrate-active virulence factors involved in host-pathogen interactions are their large sizes and modular complexities. This has made them recalcitrant to structural analysis, and therefore our understanding of the significance of modularity in these important proteins is lagging. Clostridium perfringens is a prevalent human pathogen that harbors a wide array of large, extracellular carbohydrate-active enzymes and is an excellent and relevant model system to approach this problem. Here we describe the complete structure of C. perfringens GH84C (NagJ), a 1001-amino acid multimodular homolog of the C. perfringens micro-toxin, which was determined using a combination of small angle x-ray scattering and x-ray crystallography. The resulting structure reveals unprecedented insight into how catalysis, carbohydrate-specific adherence, and the formation of molecular complexes with other enzymes via an ultra-tight protein-protein interaction are spatially coordinated in an enzyme involved in a host-pathogen interaction. PubMed: 19193644DOI: 10.1074/JBC.M808954200 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (3.3 Å) |
Structure validation
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