2QZ2

Crystal structure of a glycoside hydrolase family 11 xylanase from Aspergillus niger in complex with xylopentaose

2QZ2 の概要

• エントリーDOI: 10.2210/pdb2qz2/pdb
• 関連するBIRD辞書のPRD_ID: PRD_900116
• 分子名称: Endo-1,4-beta-xylanase I, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ... (5 entities in total)
• 機能のキーワード: glycoside hydrolase, xylanase, glycosidase, xylan degradation, hydrolase
• 由来する生物種: Aspergillus niger
• 細胞内の位置: Secreted (By similarity): P55329
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 20655.60

構造登録者

Vandermarliere, E.,Rombouts, S.,Strelkov, S.V.,Delcour, J.A.,Courtin, C.M.,Rabijns, A. (登録日: 2007-08-16, 公開日: 2007-12-25, 最終更新日: 2024-10-09)

主引用文献

Vandermarliere, E.,Bourgois, T.M.,Rombouts, S.,Van Campenhout, S.,Volckaert, G.,Strelkov, S.V.,Delcour, J.A.,Rabijns, A.,Courtin, C.M.
Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases.
Biochem.J., 410:71-79, 2008

PubMed Abstract: GH 11 (glycoside hydrolase family 11) xylanases are predominant enzymes in the hydrolysis of heteroxylan, an abundant structural polysaccharide in the plant cell wall. To gain more insight into the protein-ligand interactions of the glycone as well as the aglycone subsites of these enzymes, catalytically incompetent mutants of the Bacillus subtilis and Aspergillus niger xylanases were crystallized, soaked with xylo-oligosaccharides and subjected to X-ray analysis. For both xylanases, there was clear density for xylose residues in the -1 and -2 subsites. In addition, for the B. subtilis xylanase, there was also density for xylose residues in the -3 and +1 subsite showing the spanning of the -1/+1 subsites. These results, together with the observation that some residues in the aglycone subsites clearly adopt a different conformation upon substrate binding, allowed us to identify the residues important for substrate binding in the aglycone subsites. In addition to substrate binding in the active site of the enzymes, the existence of an unproductive second ligand-binding site located on the surface of both the B. subtilis and A. niger xylanases was observed. This extra binding site may have a function similar to the separate carbohydrate-binding modules of other glycoside hydrolase families.

PubMed: 17983355
DOI: 10.1042/BJ20071128

実験手法

X-RAY DIFFRACTION (2.8 Å)