2Q5J

X-ray structure of phenylpyruvate decarboxylase in complex with 3-deaza-ThDP

2Q5J の概要

• エントリーDOI: 10.2210/pdb2q5j/pdb
• 関連するPDBエントリー: 2nxw 2q5l 2q5o 2q5q
• 分子名称: Phenylpyruvate decarboxylase, MAGNESIUM ION, 2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, ... (4 entities in total)
• 機能のキーワード: thiamine diphosphate, asymmetric dimer of dimers, open active site loops, cofactor analogue, lyase
• 由来する生物種: Azospirillum brasilense
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 121548.96

構造登録者

Versees, W.,Spaepen, S.,Wood, M.D.,Leeper, F.J.,Vanderleyden, J.,Steyaert, J. (登録日: 2007-06-01, 公開日: 2007-10-23, 最終更新日: 2023-08-30)

主引用文献

Versees, W.,Spaepen, S.,Wood, M.D.,Leeper, F.J.,Vanderleyden, J.,Steyaert, J.
Molecular mechanism of allosteric substrate activation in a thiamine diphosphate-dependent decarboxylase.
J.Biol.Chem., 282:35269-35278, 2007

PubMed Abstract: Thiamine diphosphate-dependent enzymes are involved in a wide variety of metabolic pathways. The molecular mechanism behind active site communication and substrate activation, observed in some of these enzymes, has since long been an area of debate. Here, we report the crystal structures of a phenylpyruvate decarboxylase in complex with its substrates and a covalent reaction intermediate analogue. These structures reveal the regulatory site and unveil the mechanism of allosteric substrate activation. This signal transduction relies on quaternary structure reorganizations, domain rotations, and a pathway of local conformational changes that are relayed from the regulatory site to the active site. The current findings thus uncover the molecular mechanism by which the binding of a substrate in the regulatory site is linked to the mounting of the catalytic machinery in the active site in this thiamine diphosphate-dependent enzyme.

PubMed: 17905741
DOI: 10.1074/jbc.M706048200

実験手法

X-RAY DIFFRACTION (3.2 Å)