2GTD

Crystal Structure of a Type III Pantothenate Kinase: Insight into the Catalysis of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria

Summary for 2GTD

• Entry DOI: 10.2210/pdb2gtd/pdb
• Descriptor: Type III Pantothenate Kinase (2 entities in total)
• Functional Keywords: type iii pantothenate kinase, transferase
• Biological source: Thermotoga maritima
• Cellular location: Cytoplasm : Q9WZY5
• Total number of polymer chains: 6
• Total formula weight: 165953.10

Authors

Yang, K.,Eyobo, Y.,Brand, A.L.,Martynowski, D.,Tomchick, D. (deposition date: 2006-04-27, release date: 2006-08-01, Last modification date: 2024-02-14)

Primary citation

Yang, K.,Eyobo, Y.,Brand, L.A.,Martynowski, D.,Tomchick, D.,Strauss, E.,Zhang, H.
Crystal Structure of a Type III Pantothenate Kinase: Insight into the Mechanism of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria.
J.Bacteriol., 188:5532-5540, 2006

PubMed Abstract: Pantothenate kinase (PanK) catalyzes the first step in the five-step universal pathway of coenzyme A (CoA) biosynthesis, a key transformation that generally also regulates the intracellular concentration of CoA through feedback inhibition. A novel PanK protein encoded by the gene coaX was recently identified that is distinct from the previously characterized type I PanK (exemplified by the Escherichia coli coaA-encoded PanK protein) and type II eukaryotic PanKs and is not inhibited by CoA or its thioesters. This type III PanK, or PanK-III, is widely distributed in the bacterial kingdom and accounts for the only known PanK in many pathogenic species, such as Helicobacter pylori, Bordetella pertussis, and Pseudomonas aeruginosa. Here we report the first crystal structure of a type III PanK, the enzyme from Thermotoga maritima (PanK(Tm)), solved at 2.0-A resolution. The structure of PanK(Tm) reveals that type III PanKs belong to the acetate and sugar kinase/heat shock protein 70/actin (ASKHA) protein superfamily and that they retain the highly conserved active site motifs common to all members of this superfamily. Comparative structural analysis of the PanK(Tm) active site configuration and mutagenesis of three highly conserved active site aspartates identify these residues as critical for PanK-III catalysis. Furthermore, the analysis also provides an explanation for the lack of CoA feedback inhibition by the enzyme. Since PanK-III adopts a different structural fold from that of the E. coli PanK -- which is a member of the "P-loop kinase"superfamily -- this finding represents yet another example of convergent evolution of the same biological function from a different protein ancestor.

PubMed: 16855243
DOI: 10.1128/JB.00469-06

Experimental method

X-RAY DIFFRACTION (2 Å)