2FDN

2[4FE-4S] FERREDOXIN FROM CLOSTRIDIUM ACIDI-URICI

2FDN の概要

• エントリーDOI: 10.2210/pdb2fdn/pdb
• 分子名称: FERREDOXIN, IRON/SULFUR CLUSTER (3 entities in total)
• 機能のキーワード: electron transport, iron-sulfur, 4fe-4s
• 由来する生物種: Clostridium acidurici
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 6243.46

構造登録者

Dauter, Z.,Wilson, K.S.,Sieker, L.C.,Meyer, J.,Moulis, J.M. (登録日: 1997-10-01, 公開日: 1998-04-08, 最終更新日: 2024-02-14)

主引用文献

Dauter, Z.,Wilson, K.S.,Sieker, L.C.,Meyer, J.,Moulis, J.M.
Atomic resolution (0.94 A) structure of Clostridium acidurici ferredoxin. Detailed geometry of [4Fe-4S] clusters in a protein.
Biochemistry, 36:16065-16073, 1997

PubMed Abstract: The crystal structure of the 2[4Fe-4S] ferredoxin from Clostridium acidurici has been solved using X-ray diffraction data extending to atomic resolution, 0.94 A, recorded at 100 K. The model was refined with anisotropic representation of atomic displacement parameters for all non-hydrogen atoms and with hydrogens riding on their parent atoms. Stereochemical restraints were applied to the protein chain but not to the iron-sulfur clusters. The final R factor is 10.03 % for all data. Inversion of the final least-squares matrix allowed direct estimation of the errors of individual parameters. The estimated errors in positions for protein main chain atoms are below 0.02 A and about 0.003 A for the heavier [4Fe-4S] cluster atoms. Significant differences between the stereochemistry of the two clusters and distortion of both of them from ideal Td tetrahedral symmetry can be defined in detail at this level of accuracy. Regions of alternative conformations include not only protein side chains but also two regions of the main chain. One such region is the loop of residues 25-29, which was highly disordered in the room temperature structure.

PubMed: 9405040
DOI: 10.1021/bi972155y

実験手法

X-RAY DIFFRACTION (0.94 Å)