2FAR

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese

Summary for 2FAR

Related2FAO 2FAQ
Descriptorprobable ATP-dependent DNA ligase, MANGANESE (II) ION, SULFATE ION, ... (5 entities in total)
Functional Keywordspolymerase, primase, ligase, nhej, datp, hydrolase-transferase complex, hydrolase/transferase
Biological sourcePseudomonas aeruginosa
Total number of polymer chains2
Total molecular weight69876.62
Authors
Zhu, H.,Nandakumar, J.,Aniukwu, J.,Wang, L.K.,Glickman, M.S.,Lima, C.D.,Shuman, S. (deposition date: 2005-12-07, release date: 2006-05-23, Last modification date: 2017-10-18)
Primary citation
Zhu, H.,Nandakumar, J.,Aniukwu, J.,Wang, L.K.,Glickman, M.S.,Lima, C.D.,Shuman, S.
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103:1711-1716, 2006
PubMed: 16446439 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.0509083103
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.232901.2%3.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution