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2KM4

Solution structure of Rtt103 CTD interacting domain

Summary for 2KM4
Entry DOI10.2210/pdb2km4/pdb
NMR InformationBMRB: 16411
DescriptorRegulator of Ty1 transposition protein 103 (1 entity in total)
Functional Keywordsctd-interacting domain, rna polymerase ii binding protein, phosphoprotein, transcription termination, dna-binding, nucleus, transcription, transcription regulation, transcription regulator
Biological sourceSaccharomyces cerevisiae (yeast)
Cellular locationNucleus: Q05543
Total number of polymer chains1
Total formula weight16569.10
Authors
Lunde, B.M.,Reichow, S.,Kim, M.,Leeper, T.C.,Becker, R.,Buratowski, S.,Meinhart, A.,Varani, G. (deposition date: 2009-07-20, release date: 2010-09-08, Last modification date: 2024-05-01)
Primary citationLunde, B.M.,Reichow, S.L.,Kim, M.,Suh, H.,Leeper, T.C.,Yang, F.,Mutschler, H.,Buratowski, S.,Meinhart, A.,Varani, G.
Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.
Nat.Struct.Mol.Biol., 17:1195-1201, 2010
Cited by
PubMed Abstract: Phosphorylation of the C-terminal domain (CTD) of RNA polymerase II controls the co-transcriptional assembly of RNA processing and transcription factors. Recruitment relies on conserved CTD-interacting domains (CIDs) that recognize different CTD phosphoisoforms during the transcription cycle, but the molecular basis for their specificity remains unclear. We show that the CIDs of two transcription termination factors, Rtt103 and Pcf11, achieve high affinity and specificity both by specifically recognizing the phosphorylated CTD and by cooperatively binding to neighboring CTD repeats. Single-residue mutations at the protein-protein interface abolish cooperativity and affect recruitment at the 3' end processing site in vivo. We suggest that this cooperativity provides a signal-response mechanism to ensure that its action is confined only to proper polyadenylation sites where Ser2 phosphorylation density is highest.
PubMed: 20818393
DOI: 10.1038/nsmb.1893
PDB entries with the same primary citation
Experimental method
SOLUTION NMR
Structure validation

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