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23SR

Cryo-EM structure of CDK2 in complex with CRBN/DDB1 and B11

これはPDB形式変換不可エントリーです。
23SR の概要
エントリーDOI10.2210/pdb23sr/pdb
EMDBエントリー69221
分子名称Protein cereblon, Oplophorus-luciferin 2-monooxygenase catalytic subunit,Cyclin-dependent kinase 2,GFP-like fluorescent chromoprotein, DNA damage-binding protein 1, ... (4 entities in total)
機能のキーワードcyclin-dependent kinase 2, cereblon, molecular glue, complex, cell cycle
由来する生物種Homo sapiens (human)
詳細
タンパク質・核酸の鎖数3
化学式量合計229823.46
構造登録者
Li, X.Z.,Jiang, Y. (登録日: 2026-02-16, 公開日: 2026-07-01)
主引用文献Pei, Y.,Lin, W.,Li, X.,Meng, Y.,Yin, Y.,Pan, B.,Zhou, L.,Cao, L.,Cang, Y.,Jiang, Y.,Lu, W.,Meng, Z.
Selective CDK2 Degradation via Noncanonical Recruitment.
J.Med.Chem., 2026
Cited by
PubMed Abstract: Cyclin-dependent kinase 2 (CDK2) represents a critical therapeutic target in tumors resistant to CDK4/6 inhibitors or with amplification. However, selective inhibition of CDK2 remains challenging owing to the high structural homology among CDKs. In this study, we identify and as cereblon (CRBN)-based molecular glue degraders that selectively degrade CDK2. Ternary complex structures reveal a noncanonical recruitment mode centered on CDK2 Glu57, which bypasses the canonical G-loop/β-hairpin and kinase glycine-rich loop interactions and is stabilized by an extended CRBN-CDK2 interface. Mechanistically, these degraders inhibit retinoblastoma (Rb) phosphorylation and induce G1/S-phase arrest, suppressing CDK2-dependent cell proliferation. further exhibits improved pharmacokinetics, measurable oral bioavailability, and target engagement, achieving intratumoral CDK2 degradation following intraperitoneal administration. Collectively, this study provides a structural blueprint for designing selective kinase degraders and establishes B12 as a chemically tractable probe for targeting CDK2-driven malignancies.
PubMed: 42334090
DOI: 10.1021/acs.jmedchem.6c01264
主引用文献が同じPDBエントリー
実験手法
ELECTRON MICROSCOPY (2.85 Å)
構造検証レポート
現在、このエントリーの wwPDBの検証レポートはご利用頂けません。

255900

件を2026-07-01に公開中

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