1YTN

HYDROLASE

1YTN の概要

• エントリーDOI: 10.2210/pdb1ytn/pdb
• 分子名称: YERSINIA PROTEIN TYROSINE PHOSPHATASE, NITRATE ION (3 entities in total)
• 機能のキーワード: protein tyrosine phosphatase, hydrolase
• 由来する生物種: Yersinia enterocolitica
• 細胞内の位置: Secreted: P15273
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 33615.89

構造登録者

Yuvaniyama, C.,Fauman, E.B.,Saper, M.A. (登録日: 1996-05-01, 公開日: 1996-11-08, 最終更新日: 2024-05-22)

主引用文献

Fauman, E.B.,Yuvaniyama, C.,Schubert, H.L.,Stuckey, J.A.,Saper, M.A.
The X-ray crystal structures of Yersinia tyrosine phosphatase with bound tungstate and nitrate. Mechanistic implications.
J.Biol.Chem., 271:18780-18788, 1996

PubMed Abstract: X-ray crystal structures of the Yersinia tyrosine phosphatase (PTPase) in complex with tungstate and nitrate have been solved to 2. 4-A resolution. Tetrahedral tungstate, WO42-, is a competitive inhibitor of the enzyme and is isosteric with the substrate and product of the catalyzed reaction. Planar nitrate, NO3-, is isosteric with the PO3 moiety of a phosphotransfer transition state. The crystal structures of the Yersinia PTPase with and without ligands, together with biochemical data, permit modeling of key steps along the reaction pathway. These energy-minimized models are consistent with a general acid-catalyzed, in-line displacement of the phosphate moiety to Cys403 on the enzyme, followed by attack by a nucleophilic water molecule to release orthophosphate. This nucleophilic water molecule is identified in the crystal structure of the nitrate complex. The active site structure of the PTPase is compared to alkaline phosphatase, which employs a similar phosphomonoester hydrolysis mechanism. Both enzymes must stabilize charges at the nucleophile, the PO3 moiety of the transition state, and the leaving group. Both an associative (bond formation preceding bond cleavage) and a dissociative (bond cleavage preceding bond formation) mechanism were modeled, but a dissociative-like mechanism is favored for steric and chemical reasons. Since nearly all of the 47 invariant or highly conserved residues of the PTPase domain are clustered at the active site, we suggest that the mechanism postulated for the Yersinia enzyme is applicable to all the PTPases.

PubMed: 8702535
DOI: 10.1074/jbc.271.31.18780

実験手法

X-RAY DIFFRACTION (2.4 Å)