1X26

Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone

1X26 の概要

• エントリーDOI: 10.2210/pdb1x26/pdb
• 分子名称: 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE (3 entities in total)
• 機能のキーワード: dna, aa mismatch, drug
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 7633.45

構造登録者

Nakatani, K.,Hagihara, S.,Goto, Y.,Kobori, A.,Hagihara, M.,Hayashi, G.,Kyo, M.,Nomura, M.,Mishima, M.,Kojima, C. (登録日: 2005-04-20, 公開日: 2006-04-04, 最終更新日: 2024-05-29)

主引用文献

Nakatani, K.,Hagihara, S.,Goto, Y.,Kobori, A.,Hagihara, M.,Hayashi, G.,Kyo, M.,Nomura, M.,Mishima, M.,Kojima, C.
Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats
Nat.Chem.Biol., 1:39-43, 2005

PubMed Abstract: DNA trinucleotide repeats, particularly CXG, are common within the human genome. However, expansion of trinucleotide repeats is associated with a number of disorders, including Huntington disease, spinobulbar muscular atrophy and spinocerebellar ataxia. In these cases, the repeat length is known to correlate with decreased age of onset and disease severity. Repeat expansion of (CAG)n, (CTG)n and (CGG)n trinucleotides may be related to the increased stability of alternative DNA hairpin structures consisting of CXG-CXG triads with X-X mismatches. Small-molecule ligands that selectively bound to CAG repeats could provide an important probe for determining repeat length and an important tool for investigating the in vivo repeat extension mechanism. Here we report that napthyridine-azaquinolone (NA, 1) is a ligand for CAG repeats and can be used as a diagnostic tool for determining repeat length. We show by NMR spectroscopy that binding of NA to CAG repeats induces the extrusion of a cytidine nucleotide from the DNA helix.

PubMed: 16407992
DOI: 10.1038/nchembio708

実験手法

SOLUTION NMR