1W46

P4 protein from Bacteriophage PHI12 in complex with ADP and MG

1W46 の概要

• エントリーDOI: 10.2210/pdb1w46/pdb
• 関連するPDBエントリー: 1W44 1W47 1W48 1W49 1W4A 1W4B 1W4C
• 分子名称: NTPASE P4, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... (4 entities in total)
• 機能のキーワード: dsrna virus, packaging atpase, hexameric helicase, molecular motor, non-hydrolysable atp analogue, hydrolase
• 由来する生物種: BACTERIOPHAGE PHI-12 (BACTERIOPHAGE PHI12)
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 106805.81

構造登録者

Mancini, E.J.,Kainov, D.E.,Grimes, J.M.,Tuma, R.,Bamford, D.H.,Stuart, D.I. (登録日: 2004-07-22, 公開日: 2004-11-04, 最終更新日: 2024-05-08)

主引用文献

Mancini, E.J.,Kainov, D.E.,Grimes, J.M.,Tuma, R.,Bamford, D.H.,Stuart, D.I.
Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118:743-, 2004

PubMed Abstract: Many viruses package their genome into preformed capsids using packaging motors powered by the hydrolysis of ATP. The hexameric ATPase P4 of dsRNA bacteriophage phi12, located at the vertices of the icosahedral capsid, is such a packaging motor. We have captured crystallographic structures of P4 for all the key points along the catalytic pathway, including apo, substrate analog bound, and product bound. Substrate and product binding have been observed as both binary complexes and ternary complexes with divalent cations. These structures reveal large movements of the putative RNA binding loop, which are coupled with nucleotide binding and hydrolysis, indicating how ATP hydrolysis drives RNA translocation through cooperative conformational changes. Two distinct conformations of bound nucleotide triphosphate suggest how hydrolysis is activated by RNA binding. This provides a model for chemomechanical coupling for a prototype of the large family of hexameric helicases and oligonucleotide translocating enzymes.

PubMed: 15369673
DOI: 10.1016/J.CELL.2004.09.007

実験手法

X-RAY DIFFRACTION (2.7 Å)