1S2P

The structure and refinement of apocrustacyanin C2 to 1.3A resolution and the search for differences between this protein and the homologous apoproteins A1 and C1

Summary for 1S2P

• Entry DOI: 10.2210/pdb1s2p/pdb
• Descriptor: Crustacyanin C2 subunit, SULFATE ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ... (4 entities in total)
• Functional Keywords: apocrustacyanin, x-ray refinement, post-translational modifications, protein binding
• Biological source: Homarus gammarus (European lobster)
• Cellular location: Secreted, extracellular space: P80029
• Total number of polymer chains: 2
• Total formula weight: 41802.76

Authors

Habash, J.,Helliwell, J.R.,Raftery, J.,Cianci, M.,Rizkallah, P.J.,Chayen, N.E.,NNeji, G.A.,Zakalsky, P.F. (deposition date: 2004-01-09, release date: 2004-03-02, Last modification date: 2023-08-23)

Primary citation

Habash, J.,Helliwell, J.R.,Raftery, J.,Cianci, M.,Rizkallah, P.J.,Chayen, N.E.,Nneji, G.A.,Zagalsky, P.F.
The structure and refinement of apocrustacyanin C2 to 1.3 A resolution and the search for differences between this protein and the homologous apoproteins A1 and C1.
Acta Crystallogr.,Sect.D, 60:493-498, 2004

PubMed Abstract: The blue carotenoprotein alpha-crustacyanin of Homarus gammarus lobster carapace is comprised chemically of five 20 kDa subunits. Only two genes for the proteins have been isolated (J. B. C. Findlay, personal communication) and the five apoproteins fall into two sets of homologous proteins based on their chemical properties (CRTC, consisting of apoproteins C(1), C(2) and A(1), and CRTA, consisting of apoproteins A(2) and A(3)). The diffraction quality of apo C(2) has been improved from 2.2 to 1.3 A and its structure solved. The structure is compared with the A(1) and C(1) proteins determined at 1.4 A [Cianci et al. (2001), Acta Cryst. D57, 1219-1229] and 1.15 A, respectively [Gordon et al. (2001), Acta Cryst. D57, 1230-1237] and found to be very similar. Normalized B-factor difference plots per residue of different types were used to try to find chemically modified residues; none were found at these resolutions. It remains possible that the differences between the CRTC proteins result from differences in amidation. By comparison of a crystal grown with glycerol (studied at 1.6 A) and one grown without glycerol (studied at 1.3 A) it was seen that glycerol bound at the astaxanthin site.

PubMed: 14993674
DOI: 10.1107/S090744490400037X

Experimental method

X-RAY DIFFRACTION (1.3 Å)