1PWL

Crystal structure of human Aldose Reductase complexed with NADP and Minalrestat

1PWL の概要

• エントリーDOI: 10.2210/pdb1pwl/pdb
• 関連するPDBエントリー: 1PWM
• 分子名称: aldose reductase, 2[4-BROMO-2-FLUOROPHENYL)METHYL]-6-FLUOROSPIRO[ISOQUINOLINE-4-(1H),3'-PYRROLIDINE]-1,2',3,5'(2H)-TETRONE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... (4 entities in total)
• 機能のキーワード: aldose reductase, atomic resolution, ternary complex, inhibitor binding, oxidoreductase
• 由来する生物種: Homo sapiens (human)
• 細胞内の位置: Cytoplasm: P15121
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 37090.95

構造登録者

El-Kabbani, O.,Darmanin, C.,Schneider, T.R.,Hazemann, I.,Ruiz, F.,Oka, M.,Joachimiak, A.,Schulze-Briese, C.,Tomizaki, T.,Mitschler, A.,Podjarny, A. (登録日: 2003-07-02, 公開日: 2004-02-24, 最終更新日: 2024-04-03)

主引用文献

El-Kabbani, O.,Darmanin, C.,Schneider, T.R.,Hazemann, I.,Ruiz, F.,Oka, M.,Joachimiak, A.,Schulze-Briese, C.,Tomizaki, T.,Mitschler, A.,Podjarny, A.
Ultrahigh resolution drug design. II. Atomic resolution structures of human aldose reductase holoenzyme complexed with Fidarestat and Minalrestat: implications for the binding of cyclic imide inhibitors
PROTEINS, 55:805-813, 2004

PubMed Abstract: The X-ray structures of human aldose reductase holoenzyme in complex with the inhibitors Fidarestat (SNK-860) and Minalrestat (WAY-509) were determined at atomic resolutions of 0.92 A and 1.1 A, respectively. The hydantoin and succinimide moieties of the inhibitors interacted with the conserved anion-binding site located between the nicotinamide ring of the coenzyme and active site residues Tyr48, His110, and Trp111. Minalrestat's hydrophobic isoquinoline ring was bound in an adjacent pocket lined by residues Trp20, Phe122, and Trp219, with the bromo-fluorobenzyl group inside the "specificity" pocket. The interactions between Minalrestat's bromo-fluorobenzyl group and the enzyme include the stacking against the side-chain of Trp111 as well as hydrogen bonding distances with residues Leu300 and Thr113. The carbamoyl group in Fidarestat formed a hydrogen bond with the main-chain nitrogen atom of Leu300. The atomic resolution refinement allowed the positioning of hydrogen atoms and accurate determination of bond lengths of the inhibitors, coenzyme NADP+ and active-site residue His110. The 1'-position nitrogen atom in the hydantoin and succinimide moieties of Fidarestat and Minalrestat, respectively, form a hydrogen bond with the Nepsilon2 atom of His 110. For Fidarestat, the electron density indicated two possible positions for the H-atom in this bond. Furthermore, both native and anomalous difference maps indicated the replacement of a water molecule linked to His110 by a Cl-ion. These observations suggest a mechanism in which Fidarestat is bound protonated and becomes negatively charged by donating the proton to His110, which may have important implications on drug design.

PubMed: 15146479
DOI: 10.1002/prot.20001

実験手法

X-RAY DIFFRACTION (1.1 Å)