1OCV

the F116W mutant structure of ketosteroid isomerase from Comamonas testosteroni

Summary for 1OCV

• Entry DOI: 10.2210/pdb1ocv/pdb
• Related: 1BUQ 1ISK 1QJG 8CHO
• Descriptor: STEROID DELTA-ISOMERASE (2 entities in total)
• Functional Keywords: ketosteroid isomerase, delta-5-3-ketosteroid
• Biological source: COMAMONAS TESTOSTERONI
• Total number of polymer chains: 4
• Total formula weight: 53852.76

Authors

Yun, Y.S.,Lee, T.-H.,Shin, S. (deposition date: 2003-02-11, release date: 2003-07-24, Last modification date: 2023-12-13)

Primary citation

Yun, Y.S.,Lee, T.-H.,Nam, G.H.,Jang, D.S.,Shin, S.,Oh, B.-H.,Choi, K.Y.
Origin of the Different Ph Activity Profile in Two Homologous Ketosteroid Isomerases
J.Biol.Chem., 278:28229-, 2003

PubMed Abstract: Two homologous Delta5-3-ketosteroid isomerases from Comamonas testosteroni (TI-WT) and Pseudomonas putida biotype B (PI-WT) exhibit different pH activity profiles. TI-WT loses activity below pH 5.0 due to the protonation of the conserved catalytic base, Asp-38, while PI-WT does not. Based on the structural analysis of PI-WT, the critical catalytic base, Asp-38, was found to form a hydrogen bond with the indole ring NH of Trp-116, which is homologously replaced with Phe-116 in TI-WT. To investigate the role of Trp-116, we prepared the F116W mutant of TI-WT (TI-F116W) and the W116F mutant of PI-WT (PI-W116F) and compared kinetic parameters of those mutants at different pH levels. PI-W116F exhibited significantly decreased catalytic activity at acidic pH like TI-WT, whereas TI-F116W maintained catalytic activity at acidic pH like PI-WT and increased the kcat/Km value by 2.5- to 4.7-fold compared with TI-WT at pH 3.8. The crystal structure of TI-F116W clearly showed that the indole ring NH of Trp-116 could form a hydrogen bond with the carboxyl oxygen of Asp-38 like that of PI-WT. The present results demonstrate that the activities of both PI-WT and TI-F116W at low pH were maintained by a tryptophan, which was able not only to lower the pKa value of the catalytic base but also to increase the substrate affinity. This is one example of the strategy nature can adopt to evolve the diversity of the catalytic function in the enzymes. Our results provide insight into deciphering the molecular evolution of the enzyme and creating novel enzymes by protein engineering.

PubMed: 12734184
DOI: 10.1074/JBC.M302166200

Experimental method

X-RAY DIFFRACTION (2 Å)