1JV5

Anti-blood group A Fv

Summary for 1JV5

• Entry DOI: 10.2210/pdb1jv5/pdb
• Descriptor: Ig kappa chain precursor V region, Ig chain heavy chain precursor V region (3 entities in total)
• Functional Keywords: immunoglobulin, immune system, sugar binding protein
• Biological source: Homo sapiens (human); More
• Cellular location: Secreted : P01594
• Total number of polymer chains: 2
• Total formula weight: 24686.37

Authors

Thomas, R.,Patenaude, S.I.,MacKenzie, C.R.,To, R.,Hirama, T.,Young, N.M.,Evans, S.V. (deposition date: 2001-08-28, release date: 2002-01-09, Last modification date: 2024-10-09)

Primary citation

Thomas, R.,Patenaude, S.I.,MacKenzie, C.R.,To, R.,Hirama, T.,Young, N.M.,Evans, S.V.
Structure of an anti-blood group A Fv and improvement of its binding affinity without loss of specificity.
J.Biol.Chem., 277:2059-2064, 2002

PubMed Abstract: The specificity of antibody recognition of the ABO blood group trisaccharide antigens has been explored by crystal structure analysis and mutation methods. The crystal structure of the Fv corresponding to the anti-blood group A antibody AC1001 has been determined to 2.2-A resolution and reveals a binding pocket that is complementary to the blood group A-trisaccharide antigen. The effect of mutating specific residues lining this pocket on binding to the A and B blood group oligosaccharide antigens was investigated through a panel of single point mutations and through a phage library of mutations in complementarity determining region H3. Both approaches gave several mutants with improved affinity for antigen. Surface plasmon resonance indicated up to 8-fold enhancement in affinity for the A-pentasaccharide with no observable binding to the blood group B antigen. This is the first example of single point mutations in a carbohydrate-binding antibody resulting in significant increases in binding affinity without loss of specificity.

PubMed: 11679577
DOI: 10.1074/jbc.M104364200

Experimental method

X-RAY DIFFRACTION (2.2 Å)