1J2A

Structure of E. coli cyclophilin B K163T mutant

1J2A の概要

• エントリーDOI: 10.2210/pdb1j2a/pdb
• 関連するPDBエントリー: 1J28 1J29
• 分子名称: cyclophilin B (2 entities in total)
• 機能のキーワード: beta barrel, isomerase
• 由来する生物種: Escherichia coli
• 細胞内の位置: Periplasm: P20752
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 18070.33

構造登録者

Konno, M.,Sano, Y.,Okudaira, K.,Kawaguchi, Y.,Yamagishi-Ohmori, Y.,Fushinobu, S.,Matsuzawa, H. (登録日: 2002-12-26, 公開日: 2004-02-10, 最終更新日: 2023-10-25)

主引用文献

Konno, M.,Sano, Y.,Okudaira, K.,Kawaguchi, Y.,Yamagishi-Ohmori, Y.,Fushinobu, S.,Matsuzawa, H.
Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271:3794-3803, 2004

PubMed Abstract: Cyclophilins facilitate the peptidyl-prolyl isomerization of a trans-isomer to a cis-isomer in the refolding process of unfolded proteins to recover the natural folding state with cis-proline conformation. To date, only short peptides with a cis-form proline have been observed in complexes of human and Escherichia coli proteins of cyclophilin A, which is present in cytoplasm. The crystal structures analyzed in this study show two complexes in which peptides having a trans-form proline, i.e. succinyl-Ala-trans-Pro-Ala-p-nitroanilide and acetyl-Ala-Ala-trans-Pro-Ala-amidomethylcoumarin, are bound on a K163T mutant of Escherichia coli cyclophilin B, the preprotein of which has a signal sequence. Comparison with cis-form peptides bound to cyclophilin A reveals that in any case the proline ring is inserted into the hydrophobic pocket and a hydrogen bond between CO of Pro and Neta2 of Arg is formed to fix the peptide. On the other hand, in the cis-isomer, the formation of two hydrogen bonds of NH and CO of Ala preceding Pro with the protein fixes the peptide, whereas in the trans-isomer formation of a hydrogen bond between CO preceding Ala-Pro and His47 Nepsilon2 via a mediating water molecule allows the large distortion in the orientation of Ala of Ala-Pro. Although loss of double bond character of the amide bond of Ala-Pro is essential to the isomerization pathway occurring by rotating around its bond, these peptides have forms impossible to undergo proton transfer from the guanidyl group of Arg to the prolyl N atom, which induces loss of double bond character.

PubMed: 15355356
DOI: 10.1111/j.1432-1033.2004.04321.x

実験手法

X-RAY DIFFRACTION (1.8 Å)