1G27

CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE DEFORMYLASE COMPLEXED WITH THE INHIBITOR BB-3497

1G27 の概要

• エントリーDOI: 10.2210/pdb1g27/pdb
• 関連するPDBエントリー: 1G2A
• 分子名称: POLYPEPTIDE DEFORMYLASE, NICKEL (II) ION, 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE, ... (4 entities in total)
• 機能のキーワード: bb-3497, inhibition, polypeptide deformylase, hydrolase
• 由来する生物種: Escherichia coli
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 58843.13

構造登録者

Clements, J.M.,Beckett, P.,Brown, A.,Catlin, C.,Lobell, M.,Palan, S.,Thomas, W.,Whittaker, M.,Baker, P.J.,Rodgers, H.F.,Barynin, V.,Rice, D.W.,Hunter, M.G. (登録日: 2000-10-17, 公開日: 2001-10-17, 最終更新日: 2024-02-07)

主引用文献

Clements, J.M.,Beckett, R.P.,Brown, A.,Catlin, G.,Lobell, M.,Palan, S.,Thomas, W.,Whittaker, M.,Wood, S.,Salama, S.,Baker, P.J.,Rodgers, H.F.,Barynin, V.,Rice, D.W.,Hunter, M.G.
Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor.
Antimicrob.Agents Chemother., 45:563-570, 2001

PubMed Abstract: Peptide deformylase (PDF) is an essential bacterial metalloenzyme which deformylates the N-formylmethionine of newly synthesized polypeptides and as such represents a novel target for antibacterial chemotherapy. To identify novel PDF inhibitors, we screened a metalloenzyme inhibitor library and identified an N-formyl-hydroxylamine derivative, BB-3497, and a related natural hydroxamic acid antibiotic, actinonin, as potent and selective inhibitors of PDF. To elucidate the interactions that contribute to the binding affinity of these inhibitors, we determined the crystal structures of BB-3497 and actinonin bound to Escherichia coli PDF at resolutions of 2.1 and 1.75 A, respectively. In both complexes, the active-site metal atom was pentacoordinated by the side chains of Cys 90, His 132, and His 136 and the two oxygen atoms of N-formyl-hydroxylamine or hydroxamate. BB-3497 had activity against gram-positive bacteria, including methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus faecalis, and activity against some gram-negative bacteria. Time-kill analysis showed that the mode of action of BB-3497 was primarily bacteriostatic. The mechanism of resistance was via mutations within the formyltransferase gene, as previously described for actinonin. While actinonin and its derivatives have not been used clinically because of their poor pharmacokinetic properties, BB-3497 was shown to be orally bioavailable. A single oral dose of BB-3497 given 1 h after intraperitoneal injection of S. aureus Smith or methicillin-resistant S. aureus protected mice from infection with median effective doses of 8 and 14 mg/kg of body weight, respectively. These data validate PDF as a novel target for the design of a new generation of antibacterial agents.

PubMed: 11158755
DOI: 10.1128/AAC.45.2.563-570.2001

実験手法

X-RAY DIFFRACTION (2.1 Å)