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1E05

PLASMA ALPHA ANTITHROMBIN-III

Summary for 1E05
Entry DOI10.2210/pdb1e05/pdb
Related1ANT 1ATH 1BR8 1DZG 1DZH 1E03 1E04 2ANT
DescriptorANTITHROMBIN-III, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (9 entities in total)
Functional Keywordsblood clotting, serpin
Biological sourceHOMO SAPIENS (HUMAN)
Cellular locationSecreted, extracellular space: P01008
Total number of polymer chains2
Total formula weight102780.13
Authors
McCoy, A.J.,Skinner, R.,Abrahams, J.-P.,Pei, X.Y.,Carrell, R.W. (deposition date: 2000-03-09, release date: 2000-06-02, Last modification date: 2024-10-16)
Primary citationMccoy, A.J.,Pei, X.Y.,Skinner, R.,Abrahams, J.-P.,Carrell, R.W.
Structure of Beta-Antithrombin and the Effect of Glycosylation on Antithrombin'S Heparin Affinity and Activity.
J.Mol.Biol., 326:823-, 2003
Cited by
PubMed Abstract: Antithrombin is a member of the serpin family of protease inhibitors and the major inhibitor of the blood coagulation cascade. It is unique amongst the serpins in that it circulates in a conformation that is inactive against its target proteases. Activation of antithrombin is brought about by a conformational change initiated upon binding heparin or heparan sulphate. Two isoforms exist in the circulation, alpha-antithrombin and beta-antithrombin, which differ in the amount of glycosylation present on the polypeptide chain; beta-antithrombin lacks the carbohydrate present at Asn135 in alpha-antithrombin. Of the two forms, beta-antithrombin has the higher affinity for heparin and thus functions as the major inhibitor in vivo even though it is the less abundant form. The reason for the differences in heparin affinity between the alpha and beta-forms have been shown to be due to the additional carbohydrate changing the rate of the conformational change. Here, we describe the most accurate structures of alpha-antithrombin and alpha-antithrombin+heparin pentasaccharide reported to date (2.6A and 2.9A resolution, respectively, both re-refinements using old data), and the structure of beta-antithrombin (2.6A resolution). The new structures have a remarkable degree of ordered carbohydrate and include parts of the antithrombin chain not modeled before. The structures have allowed a detailed comparison of the conformational differences between the three. They show that the structural basis of the lower affinity for heparin of alpha-antithrombin over beta-antithrombin is due to the conformational change that occurs upon heparin binding being sterically hindered by the presence of the additional bulky carbohydrate at Asn135.
PubMed: 12581643
DOI: 10.1016/S0022-2836(02)01382-7
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (2.62 Å)
Structure validation

226707

數據於2024-10-30公開中

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