1D5M

X-RAY CRYSTAL STRUCTURE OF HLA-DR4 COMPLEXED WITH PEPTIDE AND SEB

1D5M の概要

• エントリーDOI: 10.2210/pdb1d5m/pdb
• 関連するPDBエントリー: 1D5X 1D5Z 1D6E
• 関連するBIRD辞書のPRD_ID: PRD_000233
• 分子名称: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, ENTEROTOXIN TYPE B, INHIBITOR, ... (6 entities in total)
• 機能のキーワード: mhc class ii-superantigen complex, immune system-peptide inhibitor complex, peptidomimetic inhibitor, immune system/peptide inhibitor
• 由来する生物種: Homo sapiens (human); 詳細
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 73152.30

構造登録者

Swain, A.L.,Crowther, R.,Kammlott, U. (登録日: 1999-10-07, 公開日: 2000-06-28, 最終更新日: 2023-08-09)

主引用文献

Bolin, D.R.,Swain, A.L.,Sarabu, R.,Berthel, S.J.,Gillespie, P.,Huby, N.J.,Makofske, R.,Orzechowski, L.,Perrotta, A.,Toth, K.,Cooper, J.P.,Jiang, N.,Falcioni, F.,Campbell, R.,Cox, D.,Gaizband, D.,Belunis, C.J.,Vidovic, D.,Ito, K.,Crowther, R.,Kammlott, U.,Zhang, X.,Palermo, R.,Weber, D.,Guenot, J.,Nagy, Z.,Olson, G.L.
Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures.
J.Med.Chem., 43:2135-2148, 2000

PubMed Abstract: Molecular features of ligand binding to MHC class II HLA-DR molecules have been elucidated through a combination of peptide structure-activity studies and structure-based drug design, resulting in analogues with nanomolar affinity in binding assays. Stabilization of lead compounds against cathepsin B cleavage by N-methylation of noncritical backbone NH groups or by dipeptide mimetic substitutions has generated analogues that compete effectively against protein antigens in cellular assays, resulting in inhibition of T-cell proliferation. Crystal structures of four ternary complexes of different peptide mimetics with the rheumatoid arthritis-linked MHC DRB10401 and the bacterial superantigen SEB have been obtained. Peptide-sugar hybrids have also been identified using a structure-based design approach in which the sugar residue replaces a dipeptide. These studies illustrate the complementary roles played by phage display library methods, peptide analogue SAR, peptide mimetics substitutions, and structure-based drug design in the discovery of inhibitors of antigen presentation by MHC class II HLA-DR molecules.

PubMed: 10841792
DOI: 10.1021/jm000034h

実験手法

X-RAY DIFFRACTION (2 Å)