1D14

STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE

1D14 の概要

• エントリーDOI: 10.2210/pdb1d14/pdb
• 分子名称: DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3'), 6-DEOXYDAUNOMYCIN (3 entities in total)
• 機能のキーワード: right handed dna, double helix, complexed with drug, modified, dna
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 2336.80

構造登録者

Williams, L.D.,Egli, M.,Ughetto, G.,Van Der Marel, G.A.,Van Boom, J.H.,Quigley, G.J.,Wang, A.H.-J.,Rich, A.,Frederick, C.A. (登録日: 1989-10-20, 公開日: 1990-10-15, 最終更新日: 2024-02-07)

主引用文献

Williams, L.D.,Egli, M.,Ughetto, G.,van der Marel, G.A.,van Boom, J.H.,Quigley, G.J.,Wang, A.H.,Rich, A.,Frederick, C.A.
Structure of 11-deoxydaunomycin bound to DNA containing a phosphorothioate.
J.Mol.Biol., 215:313-320, 1990

PubMed Abstract: The anthracyclines form an important family of cancer chemotherapeutic agents with a strong dependence of clinical properties on minor differences in chemical structure. We describe the X-ray crystallographic solution of the three-dimensional structure of the anthracycline 11-deoxydaunomycin plus d(CGTsACG). In this complex, two drug molecules bind to each hexamer duplex. Both the drug and the DNA are covalently modified in this complex in contrast with the three previously reported DNA-anthracycline complexes. In the 11-deoxydaunomycin complex the 11 hydroxyl group is absent and a phosphate oxygen at the TpA step has been replaced by a sulfur atom leading to a phosphorothioate with absolute stereochemistry R. Surprisingly, removal of a hydroxyl group from the 11 position does not alter the relative orientation of the intercalated chromophore. However, it appears that the phosphorothioate modification influenced the crystallization and caused the 11-deoxydaunomycin-d(CGTsACG) complex to crystallize into a different lattice (space group P2) with different lattice contacts and packing forces than the non-phosphorothioated DNA-anthracycline complexes (space group P4(1)2(1)2). In the minor groove of the DNA, the unexpected position of the amino-sugar of 11-deoxydaunomycin supports the hypothesis that in solution the position of the amino sugar is dynamic.

PubMed: 2152325
DOI: 10.1016/S0022-2836(05)80349-3

実験手法

X-RAY DIFFRACTION (1.5 Å)