1L1M

SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1

Summary for 1L1M

• Entry DOI: 10.2210/pdb1l1m/pdb
• NMR Information: BMRB: 5345
• Descriptor: 5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*TP*T)-3', 5'-D(*AP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3', Lactose operon repressor (3 entities in total)
• Functional Keywords: transcription regulation, lac operon, lac repressor, natural lac operator, asymmetric dna-binding, hth, transcription regulator-dna complex, transcription regulator/dna
• Biological source: Escherichia coli
• Total number of polymer chains: 4
• Total formula weight: 27763.69

Authors

Kalodimos, C.G.,Bonvin, A.M.J.J.,Salinas, R.K.,Wechselberger, R.,Boelens, R.,Kaptein, R. (deposition date: 2002-02-19, release date: 2002-06-26, Last modification date: 2024-11-20)

Primary citation

Kalodimos, C.G.,Bonvin, A.M.,Salinas, R.K.,Wechselberger, R.,Boelens, R.,Kaptein, R.
Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain.
EMBO J., 21:2866-2876, 2002

PubMed Abstract: The lac repressor-operator system is a model system for understanding protein-DNA interactions and allosteric mechanisms in gene regulation. Despite the wealth of biochemical data provided by extensive mutations of both repressor and operator, the specific recognition mechanism of the natural lac operators by lac repressor has remained elusive. Here we present the first high-resolution structure of a dimer of the DNA-binding domain of lac repressor bound to its natural operator 01. The global positioning of the dimer on the operator is dramatically asymmetric, which results in a different pattern of specific contacts between the two sites. Specific recognition is accomplished by a combination of elongation and twist by 48 degrees of the right lac subunit relative to the left one, significant rearrangement of many side chains as well as sequence-dependent deformability of the DNA. The set of recognition mechanisms involved in the lac repressor-operator system is unique among other protein-DNA complexes and presents a nice example of the adaptability that both proteins and DNA exhibit in the context of their mutual interaction.

PubMed: 12065400
DOI: 10.1093/emboj/cdf318

Experimental method

SOLUTION NMR