6D9K
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, F | Uncharacterized protein | polymer | 791 | 89038.4 | 2 | UniProt (A4WYU7) Pfam (PF02171) In PDB | Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | |
2 | C, H | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | polymer | 18 | 5772.5 | 2 | Rhodobacter sphaeroides ATCC 17025 | ||
3 | G, J | DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*GP*GP*CP*AP*GP*TP*AP*AP*C)-3') | polymer | 24 | 7361.7 | 2 | Rhodobacter sphaeroides ATCC 17025 | ||
4 | A, F | ACETATE ION | non-polymer | 59.0 | 3 | Chemie (ACT) | |||
5 | A, H | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 2 | Chemie (MPD) | |||
6 | C, H | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
7 | water | water | 18.0 | 354 | Chemie (HOH) |
Sequence modifications
A, F: 2 - 777 (UniProt: A4WYU7)
PDB | External Database | Details |
---|---|---|
Met -13 | - | initiating methionine |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
Asp -6 | - | expression tag |
Tyr -5 | - | expression tag |
Lys -4 | - | expression tag |
Asp -3 | - | expression tag |
Asp -2 | - | expression tag |
Asp -1 | - | expression tag |
Asp 0 | - | expression tag |
Lys 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 204345.2 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 462.1 | |
All* | Total formula weight | 204807.3 |