5G06

Cryo-EM structure of yeast cytoplasmic exosome

エンティティ

Entity ID	鎖名	説明	種類	鎖長	化学式量	分子数	データベース名(アクセス番号)	由来する生物種	エンティティの一般名
1	A	EXOSOME COMPLEX COMPONENT RRP45	polymer	305	34001.9	1	UniProt (Q05636) Pfam (PF01138) Pfam (PF03725) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 45
2	B	EXOSOME COMPLEX COMPONENT SKI6	polymer	246	27599.7	1	UniProt (P46948) Pfam (PF01138) Pfam (PF03725) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	EXTRACELLULAR MUTANT PROTEIN 20, RIBOSOMAL RNA-PROCESSING PROTEIN 41, SUPERKILLER PROTEIN 6
3	C	EXOSOME COMPLEX COMPONENT RRP43	polymer	394	44093.0	1	UniProt (P25359) Pfam (PF01138) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 43
4	D	EXOSOME COMPLEX COMPONENT RRP46	polymer	223	24430.2	1	UniProt (P53256) Pfam (PF01138) Pfam (PF03725) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 46
5	E	EXOSOME COMPLEX COMPONENT RRP42	polymer	265	29099.2	1	UniProt (Q12277) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 42
6	F	EXOSOME COMPLEX COMPONENT MTR3	polymer	250	27590.0	1	UniProt (P48240) Pfam (PF01138) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	MRNA TRANSPORT REGULATOR 3
7	G	EXOSOME COMPLEX COMPONENT RRP40	polymer	240	26583.4	1	UniProt (Q08285) Pfam (PF21262) Pfam (PF15985) Pfam (PF18311) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 40
8	H	EXOSOME COMPLEX COMPONENT RRP4	polymer	359	39470.2	1	UniProt (P38792) Pfam (PF14382) Pfam (PF21266) Pfam (PF15985) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	RIBOSOMAL RNA-PROCESSING PROTEIN 4
9	I	EXOSOME COMPLEX COMPONENT CSL4	polymer	292	31619.3	1	UniProt (P53859) Pfam (PF21551) Pfam (PF10447) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	CEP1 SYNTHETIC LETHAL PROTEIN 4
10	J	EXOSOME COMPLEX EXONUCLEASE DIS3	polymer	1001	113855.8	1	UniProt (Q08162) Pfam (PF13638) Pfam (PF17216) Pfam (PF17849) Pfam (PF00773) Pfam (PF17215) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	CHROMOSOME DISJUNCTION PROTEIN 3, RIBOSOMAL RNA-PROCESSING PROTEIN 44
11	P	SUPERKILLER PROTEIN 7	polymer	747	84888.7	1	UniProt (Q08491) Pfam (PF00009) Pfam (PF21921) Pfam (PF21920) In PDB	SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)	CYTOPLASMIC EXOSOME COMPONENT SKI7

配列変更

C: 1 - 394 (UniProt: P25359)

PDB	外部データベース	詳細
Met 363	Val 363	conflict

E: 1 - 265 (UniProt: Q12277)

PDB	外部データベース	詳細
Ile 138	Val 138	conflict

F: 1 - 250 (UniProt: P48240)

PDB	外部データベース	詳細
Ser 75	Thr 75	conflict

J: 1 - 1001 (UniProt: Q08162)

PDB	外部データベース	詳細
Asn 171	Asp 171	conflict
Asn 551	Asp 551	conflict

非対称単位の内容

タンパク質・ 核酸鎖	鎖の数	11
	化学式量合計	483231.2
全て*	化学式量合計	483231.2

*水分子は含んでいません