5ADY
Cryo-EM structures of the 50S ribosome subunit bound with HflX
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 0 | 50S RIBOSOMAL PROTEIN L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | ESCHERICHIA COLI K-12 | |
2 | 1 | 50S RIBOSOMAL PROTEIN L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | ESCHERICHIA COLI K-12 | |
3 | 2 | 50S RIBOSOMAL PROTEIN L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | ESCHERICHIA COLI K-12 | |
4 | 3 | 50S RIBOSOMAL PROTEIN L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | ESCHERICHIA COLI K-12 | RIBOSOMAL PROTEIN A |
5 | 4 | 50S RIBOSOMAL PROTEIN L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | ESCHERICHIA COLI K-12 | RIBOSOMAL PROTEIN B |
6 | 5 | 50S RIBOSOMAL PROTEIN L1 | polymer | 234 | 24765.7 | 1 | UniProt (P0A7L0) Pfam (PF00687) In PDB | ESCHERICHIA COLI K-12 | |
7 | 6 | GTPASE HFLX | polymer | 426 | 48393.0 | 1 | UniProt (P25519) Pfam (PF19275) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) In PDB | ESCHERICHIA COLI K-12 | GTP-BINDING PROTEIN HFLX |
8 | 7 | 50S RIBOSOMAL PROTEIN L10 | polymer | 165 | 17736.6 | 1 | UniProt (P0A7J3) Pfam (PF00466) In PDB | ESCHERICHIA COLI K-12 | 50S RIBOSOMAL PROTEIN L8 |
9 | A | 5S RRNA | polymer | 120 | 38790.1 | 1 | GenBank (507148446) | ESCHERICHIA COLI K-12 | |
10 | B | 23S RRNA | polymer | 2903 | 941306.2 | 1 | GenBank (507148266) | ESCHERICHIA COLI K-12 | |
11 | C | 50S RIBOSOMAL PROTEIN L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | ESCHERICHIA COLI K-12 | |
12 | D | 50S RIBOSOMAL PROTEIN L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | ESCHERICHIA COLI K-12 | |
13 | E | 50S RIBOSOMAL PROTEIN L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | ESCHERICHIA COLI K-12 | |
14 | F | 50S RIBOSOMAL PROTEIN L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | ESCHERICHIA COLI K-12 | |
15 | G | 50S RIBOSOMAL PROTEIN L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | ESCHERICHIA COLI K-12 | |
16 | H | 50S RIBOSOMAL PROTEIN L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | ESCHERICHIA COLI K-12 | |
17 | I | 50S RIBOSOMAL PROTEIN L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | ESCHERICHIA COLI K-12 | |
18 | J | 50S RIBOSOMAL PROTEIN L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | ESCHERICHIA COLI K-12 | |
19 | K | 50S RIBOSOMAL PROTEIN L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | ESCHERICHIA COLI K-12 | |
20 | L | 50S RIBOSOMAL PROTEIN L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | ESCHERICHIA COLI K-12 | |
21 | M | 50S RIBOSOMAL PROTEIN L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | ESCHERICHIA COLI K-12 | |
22 | N | 50S RIBOSOMAL PROTEIN L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | ESCHERICHIA COLI K-12 | |
23 | O | 50S RIBOSOMAL PROTEIN L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | ESCHERICHIA COLI K-12 | |
24 | P | 50S RIBOSOMAL PROTEIN L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | ESCHERICHIA COLI K-12 | |
25 | Q | 50S RIBOSOMAL PROTEIN L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | ESCHERICHIA COLI K-12 | |
26 | R | 50S RIBOSOMAL PROTEIN L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | ESCHERICHIA COLI K-12 | |
27 | S | 50S RIBOSOMAL PROTEIN L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | ESCHERICHIA COLI K-12 | |
28 | T | 50S RIBOSOMAL PROTEIN L23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | ESCHERICHIA COLI K-12 | |
29 | U | 50S RIBOSOMAL PROTEIN L24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | ESCHERICHIA COLI K-12 | |
30 | V | 50S RIBOSOMAL PROTEIN L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | ESCHERICHIA COLI K-12 | |
31 | W | 50S RIBOSOMAL PROTEIN L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | ESCHERICHIA COLI K-12 | |
32 | X | 50S RIBOSOMAL PROTEIN L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | ESCHERICHIA COLI K-12 | |
33 | Y | 50S RIBOSOMAL PROTEIN L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | ESCHERICHIA COLI K-12 | |
34 | Z | 50S RIBOSOMAL PROTEIN L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | ESCHERICHIA COLI K-12 | |
35 | 6 | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
36 | 6 | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
B: 1 - 2903 (GenBank: 507148266)
PDB | External Database | Details |
---|---|---|
C 264 | G 27358 | conflict |
C 542 | U 27636 | conflict |
U 846 | C 27940 | conflict |
C 1211 | U 28305 | conflict |
G 1220 | A 28314 | conflict |
C 1229 | U 28323 | conflict |
G 1723 | A 28817 | conflict |
U 1725 | C 28819 | conflict |
C 1726 | G 28820 | conflict |
C 1727 | A 28821 | conflict |
C 1730 | U 28824 | conflict |
G 1733 | U 28827 | conflict |
G 1734 | C 28828 | conflict |
A 1735 | G 28829 | conflict |
C 2794 | U 29888 | conflict |
U 2796 | C 29890 | conflict |
A 2799 | G 29893 | conflict |
G 2802 | A 29896 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 34 |
Total formula weight | 1448146.0 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 546.5 | |
All* | Total formula weight | 1448692.5 |