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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V67

Crystal structure of a translation termination complex formed with release factor RF2.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S RRNApolymer1525494985.92GenBank (155076)Thermus thermophilus
2AZ, AY, CZ, CYP AND E-SITE TRNA(FMET)polymer7724802.84Escherichia coli
3AV, CVMRNApolymer278862.52
4AB, CB30S ribosomal protein S2polymer25629317.72UniProt (P62662)
UniProt (by SIFTS) (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
5AC, CC30S ribosomal protein S3polymer23926751.12UniProt (P62663)
UniProt (by SIFTS) (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
6AD, CD30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P80373)
In PDB		Thermus thermophilus
7AE, CE30S ribosomal protein S5polymer16217583.42UniProt (P62665)
UniProt (by SIFTS) (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
8AF, CF30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		Thermus thermophilus
9AG, CG30S ribosomal protein S7polymer15618051.02UniProt (P62667)
UniProt (by SIFTS) (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
10AH, CH30S ribosomal protein S8polymer13815868.62UniProt (P62668)
UniProt (by SIFTS) (P0DOY9)
Pfam (PF00410)
In PDB		Thermus thermophilus
11AI, CI30S ribosomal protein S9polymer12814429.72UniProt (P62669)
UniProt (by SIFTS) (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
12AJ, CJ30S ribosomal protein S10polymer10511955.02UniProt (P62653)
UniProt (by SIFTS) (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
13AK, CK30S ribosomal protein S11polymer12913737.92UniProt (P62654)
UniProt (by SIFTS) (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
14AL, CL30S ribosomal protein S12polymer13414821.62UniProt (P61941)
UniProt (by SIFTS) (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
15AM, CM30S ribosomal protein S13polymer12614338.92UniProt (P62655)
UniProt (by SIFTS) (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
16AN, CN30S ribosomal protein S14polymer617158.72UniProt (P62656)
UniProt (by SIFTS) (P0DOY6)
Pfam (PF00253)
In PDB		Thermus thermophilus
17AO, CO30S ribosomal protein S15polymer8910578.42UniProt (P62657)
UniProt (by SIFTS) (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
18AP, CP30S ribosomal protein S16polymer8810410.02UniProt (P62238)
UniProt (by SIFTS) (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
19AQ, CQ30S ribosomal protein S17polymer10512324.72UniProt (P62658)
UniProt (by SIFTS) (P0DOY7)
Pfam (PF00366)
In PDB		Thermus thermophilus
20AR, CR30S ribosomal protein S18polymer8810258.32UniProt (P62659)
UniProt (by SIFTS) (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
21AS, CS30S ribosomal protein S19polymer9310605.52UniProt (P62660)
UniProt (by SIFTS) (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
22AT, CT30S ribosomal protein S20polymer10611722.12UniProt (P62661)
UniProt (by SIFTS) (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
23AU, CU30S ribosomal protein Thxpolymer273350.02UniProt (P62613)
UniProt (by SIFTS) (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
24AX, CXBacterial peptide chain release factor 2 (RF-2)polymer37842793.52UniProt (Q72GJ6)
UniProt (by SIFTS) (Q5SM01)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Thermus thermophilusRF2
25BA, DA23S RRNApolymer2894941050.92Thermus thermophilus
26BB, DB5S RRNApolymer12440152.92Thermus thermophilus
27BD, DD50S ribosomal protein L2polymer27630532.62UniProt (Q72I07)
UniProt (by SIFTS) (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
28BE, DE50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
UniProt (by SIFTS) (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
29BF, DF50S ribosomal protein L4polymer21023304.02UniProt (Q72I05)
UniProt (by SIFTS) (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
30BG, DG50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
UniProt (by SIFTS) (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
31BH, DH50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
UniProt (by SIFTS) (P0DOY8)
Pfam (PF00347)
In PDB		Thermus thermophilus
32BI, DI50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
UniProt (by SIFTS) (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
33BK, DK50S ribosomal protein L11polymer14715526.12UniProt (P36238)
UniProt (by SIFTS) (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
34BN, DN50S ribosomal protein L13polymer16318534.02UniProt (Q72IN1)
UniProt (by SIFTS) (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
35BO, DO50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
UniProt (by SIFTS) (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
36BP, DP50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
UniProt (by SIFTS) (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
37BQ, DQ50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
UniProt (by SIFTS) (P60489)
In PDB		Thermus thermophilus
38BR, DR50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
UniProt (by SIFTS) (Q9Z9H5)
In PDB		Thermus thermophilus
39BS, DS50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)
In PDB		Thermus thermophilus
40BT, DT50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
UniProt (by SIFTS) (P60490)
In PDB		Thermus thermophilus
41BU, DU50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
UniProt (by SIFTS) (P60491)
In PDB		Thermus thermophilus
42BV, DV50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
UniProt (by SIFTS) (P60492)
In PDB		Thermus thermophilus
43BW, DW50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus
44BX, DX50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)
In PDB		Thermus thermophilus
45BY, DY50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)
In PDB		Thermus thermophilus
46BZ, DZ50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q5SHZ1)
In PDB		Thermus thermophilusTL5, GENERAL STRESS PROTEIN CTC
47B0, D050S ribosomal protein L27polymer859501.12UniProt (Q72HR3)
UniProt (by SIFTS) (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
48B1, D150S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
UniProt (by SIFTS) (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
49B2, D250S ribosomal protein L29polymer728670.32UniProt (Q72I12)
UniProt (by SIFTS) (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
50B3, D350S ribosomal protein L30polymer606799.12UniProt (Q72I22)
UniProt (by SIFTS) (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
51B4, D450S ribosomal protein L31polymer9711275.02UniProt (Q72JR0)
UniProt (by SIFTS) (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
52B5, D550S ribosomal protein L32polymer606734.12UniProt (P62652)
UniProt (by SIFTS) (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
53B6, D650S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
UniProt (by SIFTS) (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
54B7, D750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
55B8, D850S ribosomal protein L35polymer657506.22UniProt (Q72L77)
UniProt (by SIFTS) (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
56BA, DA, AA, BB, BD...MAGNESIUM IONnon-polymer24.32388Chemie (MG)
57CD, AN, CN, ADZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
AA, CA: -1 - 1546 (GenBank: 155076)
PDBExternal DatabaseDetails
G 466C 1101conflict
AL, CL: 1 - 134 (UniProt: P61941)
PDBExternal DatabaseDetails
Ala 2-insertion
Leu 3-insertion
BF, DF: 6 - 210 (UniProt: Q72I05)
PDBExternal DatabaseDetails
Met 1-insertion
Lys 2-insertion
Glu 3-insertion
Val 4-insertion
Ala 5-insertion
BN, DN: 25 - 163 (UniProt: Q72IN1)
PDBExternal DatabaseDetails
Met 1-insertion
Val 2-insertion
Lys 3-insertion
Ser 4-insertion
Ser 5-insertion
Leu 6-insertion
Ala 7-insertion
Phe 8-insertion
Leu 9-insertion
Arg 10-insertion
Gly 11-insertion
Pro 12-insertion
Pro 13-insertion
Ile 14-insertion
Pro 15-insertion
Arg 16-insertion
Gln 17-insertion
Glu 18-insertion
Gln 19-insertion
Arg 20-insertion
Arg 21-insertion
Ala 22-insertion
Leu 23-insertion
Val 24-insertion
B4, D4: 28 - 97 (UniProt: Q72JR0)
PDBExternal DatabaseDetails
Met 1-insertion
Pro 2-insertion
Leu 3-insertion
Gly 4-insertion
Val 5-insertion
His 6-insertion
Pro 7-insertion
Leu 8-insertion
Tyr 9-insertion
Thr 10-insertion
Lys 11-insertion
Arg 12-insertion
Trp 13-insertion
Leu 14-insertion
Ala 15-insertion
His 16-insertion
Gly 17-insertion
Gln 18-insertion
Asp 19-insertion
Arg 20-insertion
Ala 21-insertion
Lys 22-insertion
Lys 23-insertion
Glu 24-insertion
Ala 25-insertion
Asn 26-insertion
Val 27-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4563483.5
Non-Polymers*Number of molecules2392
Total formula weight58302.0
All*Total formula weight4621785.5
*Water molecules are not included.

218853

數據於2024-04-24公開中

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