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9FYP
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BU of 9fyp by Molmil
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Descriptor: Alpha-synuclein, CHLORIDE ION
Authors:Frey, L, Qureshi, B.M, Kwiatkowski, W, Rhyner, D, Greenwald, J, Riek, R.
Deposit date:2024-07-03
Release date:2024-07-17
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:On the pH-dependence of alpha-synuclein amyloid polymorphism and the role of secondary nucleation in seed-based amyloid propagation.
Elife, 12, 2024
9EVM
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BU of 9evm by Molmil
High pH (8.0) nitrite-bound MSOX movie series dataset 30 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [20.7 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-03-30
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
9B60
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BU of 9b60 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B5Z
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BU of 9b5z by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B64
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BU of 9b64 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH5, class23, structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B63
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BU of 9b63 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B67
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BU of 9b67 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B6A
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BU of 9b6a by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B69
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BU of 9b69 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of NTD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 2, ...
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B61
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BU of 9b61 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of LBD-TMD-TARPgamma2
Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9B68
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BU of 9b68 by Molmil
GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of NTD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 2, ...
Authors:Nakagawa, T, Greger, I.H.
Deposit date:2024-03-23
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.
Nat.Struct.Mol.Biol., 2024
9EOW
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BU of 9eow by Molmil
The 5-terminal stem-loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH
Descriptor: RNA (29-MER)
Authors:Wacker, A, Schwalbe, H.
Deposit date:2024-03-15
Release date:2024-06-19
Last modified:2024-07-31
Method:SOLUTION NMR
Cite:The 5'-terminal stem-loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH.
Nucleic Acids Res., 52, 2024
8S69
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BU of 8s69 by Molmil
Low pH (5.5) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [22.8 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S68
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BU of 8s68 by Molmil
Low pH (5.5) as-isolated MSOX movie series dataset 20 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [11.4 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S63
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BU of 8s63 by Molmil
Low pH (5.5) as-isolated MSOX movie series dataset 3 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [1.71 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S64
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BU of 8s64 by Molmil
Low pH (5.5) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [5.7 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S5Y
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BU of 8s5y by Molmil
High pH (8.0) as-isolated MSOX movie series dataset 40 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [14 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S5X
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BU of 8s5x by Molmil
High pH (8.0) as-isolated MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [3.5 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-26
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8YF7
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BU of 8yf7 by Molmil
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH6.5 (2.82A)
Descriptor: CALCIUM ION, Capsid protein alpha
Authors:Wang, C.H, Chang, W.H.
Deposit date:2024-02-24
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Molecular Mechanism of pH-Induced Protrusion Configuration Switching in Piscine Betanodavirus Implies a Novel Antiviral Strategy.
Acs Infect Dis., 2024
8YF6
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BU of 8yf6 by Molmil
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH8.0 (3.23A)
Descriptor: CALCIUM ION, Capsid protein alpha
Authors:Wang, C.H, Chang, W.H.
Deposit date:2024-02-24
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Molecular Mechanism of pH-Induced Protrusion Configuration Switching in Piscine Betanodavirus Implies a Novel Antiviral Strategy.
Acs Infect Dis., 2024
8YF8
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BU of 8yf8 by Molmil
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH5.0 (3.52A)
Descriptor: CALCIUM ION, Capsid protein alpha
Authors:Wang, C.H, Chang, W.H.
Deposit date:2024-02-24
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Molecular Mechanism of pH-Induced Protrusion Configuration Switching in Piscine Betanodavirus Implies a Novel Antiviral Strategy.
Acs Infect Dis., 2024
8YF9
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BU of 8yf9 by Molmil
Cryo-EM structure of Dragon Grouper nervous necrosis virion at pH6.5 (3.12A)
Descriptor: CALCIUM ION, Capsid protein alpha
Authors:Wang, C.H, Chang, W.H.
Deposit date:2024-02-24
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Molecular Mechanism of pH-Induced Protrusion Configuration Switching in Piscine Betanodavirus Implies a Novel Antiviral Strategy.
Acs Infect Dis., 2024
8S2Q
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BU of 8s2q by Molmil
High pH (8.0) as-isolated MSOX movie series dataset 2 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.7 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-18
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024
8S1W
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BU of 8s1w by Molmil
Structure of a quadruplex-duplex hybrid with a (-pd+l) loop progression
Descriptor: DNA (33-MER)
Authors:Vianney, Y.M, Jana, J, Weisz, K.
Deposit date:2024-02-16
Release date:2024-03-27
Last modified:2024-06-05
Method:SOLUTION NMR
Cite:A pH-Responsive Topological Switch Based on a DNA Quadruplex-Duplex Hybrid.
Chemistry, 30, 2024
8S0W
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BU of 8s0w by Molmil
High pH (8.0) as-isolated MSOX movie series dataset 1 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [0.35 MGy]
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION, ...
Authors:Rose, S.L, Ferroni, F.M, Horrell, S, Brondino, C.D, Eady, R.R, Jaho, S, Hough, M.A, Owen, A.L, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2024-02-14
Release date:2024-07-24
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Spectroscopically Validated pH-dependent MSOX Movies Provide Detailed Mechanism of Copper Nitrite Reductases.
J.Mol.Biol., 436, 2024

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PDB entries from 2024-09-18

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