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4ZVF
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BU of 4zvf by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form II (GTP-alpha-S-bound)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Diguanylate cyclase DosC, ...
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVE
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BU of 4zve by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form I (apo-form)
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
6D9M
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BU of 6d9m by Molmil
T4-Lysozyme fusion to Geobacter GGDEF
Descriptor: ACETATE ION, Fusion protein of Endolysin,Response receiver sensor diguanylate cyclase, GAF domain-containing, ...
Authors:Hallberg, Z, Doxzen, K, Kranzusch, P.J, Hammond, M.
Deposit date:2018-04-30
Release date:2019-04-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration.
Elife, 8, 2019
4YME
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BU of 4yme by Molmil
Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
Descriptor: sensory box/GGDEF family protein
Authors:Joint Center for Structural Genomics (JCSG), Shapiro, L.
Deposit date:2015-03-06
Release date:2015-04-01
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
To be published
8QJ4
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BU of 8qj4 by Molmil
Receptor Sd-Amt1 (ON-state)
Descriptor: AMMONIUM ION, Ammonium transporter, CHLORIDE ION
Authors:Andrade, S.L, Pflueger, T, Gschell, M.
Deposit date:2023-09-12
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:How sensor Amt-like proteins integrate ammonium signals.
Sci Adv, 10, 2024
3HVW
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BU of 3hvw by Molmil
Crystal Structure of the GGDEF domain of the PA2567 protein from Pseudomonas aeruginosa, Northeast Structural Genomics Consortium Target PaR365C
Descriptor: Diguanylate-cyclase (DGC)
Authors:Forouhar, F, Lew, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Foote, E.L, Wang, H, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-06-16
Release date:2009-06-23
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Northeast Structural Genomics Consortium Target PaR365C
To be published
6HBZ
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BU of 6hbz by Molmil
Bdellovibrio bacteriovorus DgcB Full-length
Descriptor: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CHLORIDE ION, ...
Authors:Lovering, A.L, Meek, R.W.
Deposit date:2018-08-13
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio.
Nat Commun, 10, 2019
3TVK
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BU of 3tvk by Molmil
Diguanylate cyclase domain of DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), D(-)-TARTARIC ACID, Diguanylate cyclase DgcZ, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-09-20
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
4WXW
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BU of 4wxw by Molmil
SadC (323-487) from Pseudomonas aeruginosa PAO1
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Liu, C, Liu, S, Gu, L.
Deposit date:2014-11-14
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SadC (323-487) from Pseudomonas aeruginosa PAO1
To Be Published
3IGN
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BU of 3ign by Molmil
Crystal Structure of the GGDEF domain from Marinobacter aquaeolei diguanylate cyclase complexed with c-di-GMP - Northeast Structural Genomics Consortium Target MqR89a
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Diguanylate cyclase
Authors:Vorobiev, S, Neely, H, Seetharaman, J, Wang, H, Foote, E.L, Ciccosanti, C, Sahdev, S, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-07-28
Release date:2009-08-11
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product.
J.Struct.Funct.Genom., 13, 2012
4URG
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BU of 4urg by Molmil
Crystal Structure of GGDEF domain from T.maritima (active-like dimer)
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
Deposit date:2014-06-30
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
8QJ3
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BU of 8qj3 by Molmil
Receptor Sd-Amt1 (OFF-state)
Descriptor: Ammonium transporter, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE
Authors:Andrade, S.L, Pflueger, T, Gschell, M.
Deposit date:2023-09-12
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:How sensor Amt-like proteins integrate ammonium signals.
Sci Adv, 10, 2024
3QYY
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BU of 3qyy by Molmil
A Novel Interaction Mode between a Microbial GGDEF Domain and the Bis-(3, 5 )-cyclic di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Yang, C.-Y, Chin, K.-H, Chou, S.-H.
Deposit date:2011-03-04
Release date:2011-11-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)(2) at the active site
Acta Crystallogr.,Sect.D, 67, 2011
3I5C
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BU of 3i5c by Molmil
Crystal structure of a fusion protein containing the leucine zipper of GCN4 and the GGDEF domain of WspR from Pseudomonas aeruginosa
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Fusion of General control protein GCN4 and WSPR response regulator protein, MAGNESIUM ION
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
6EIB
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BU of 6eib by Molmil
Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SULFATE ION, ...
Authors:Chouhan, O.P, Roske, Y.
Deposit date:2017-09-19
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.
Biochem.Biophys.Res.Commun., 523, 2020
3EZU
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BU of 3ezu by Molmil
Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution
Descriptor: 1,2-ETHANEDIOL, GGDEF domain protein, UNKNOWN LIGAND
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-10-23
Release date:2008-11-18
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution
To be published
3ICL
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BU of 3icl by Molmil
X-Ray Structure of Protein (EAL/GGDEF domain protein) from M.capsulatus, Northeast Structural Genomics Consortium Target McR174C
Descriptor: EAL/GGDEF domain protein, SULFATE ION
Authors:Kuzin, A, Chen, Y, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Foote, E.L, Wang, H, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-07-17
Release date:2009-08-04
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Northeast Structural Genomics Consortium Target McR174C
To be Published
3PJX
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BU of 3pjx by Molmil
Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32
Descriptor: 1,2-ETHANEDIOL, Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.0002 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
3HVA
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BU of 3hva by Molmil
Crystal structure of FimX GGDEF domain from Pseudomonas aeruginosa
Descriptor: Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.042 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
3I5B
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BU of 3i5b by Molmil
Crystal structure of the isolated GGDEF domain of WpsR from Pseudomonas aeruginosa
Descriptor: L(+)-TARTARIC ACID, WspR response regulator
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
6KHU
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BU of 6khu by Molmil
The crystal structure of a DGC protein from Thermotoga maritima
Descriptor: Diguanylate cyclase/phosphodiesterase-domain containing protein, ZINC ION
Authors:Been, K.W, Yoon, H.J, Lee, H.H.
Deposit date:2019-07-16
Release date:2020-07-22
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Crystal structure of a DGC protein from Thermotoga maritima
To Be Published
4ZVG
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BU of 4zvg by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form III
Descriptor: Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
6ZXB
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BU of 6zxb by Molmil
Diguanylate cyclase DgcR (I-site mutant) in native state
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Teixeira, R.D, Schirmer, T.
Deposit date:2020-07-29
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.
Nat Commun, 12, 2021
3MTK
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BU of 3mtk by Molmil
X-Ray Structure of Diguanylate cyclase/phosphodiesterase from Caldicellulosiruptor saccharolyticus, Northeast Structural Genomics Consortium Target ClR27C
Descriptor: Diguanylate cyclase/phosphodiesterase
Authors:Kuzin, A, Abashidze, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-04-30
Release date:2010-06-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Northeast Structural Genomics Consortium Target ClR27C
To be Published
4URS
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BU of 4urs by Molmil
Crystal Structure of GGDEF domain from T.maritima
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE, ...
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
Deposit date:2014-07-02
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014

 

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