PDB: 446 件ウェブページステータス検索Chemie searchBIRD

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5KH8	Solution structures of the apo state fluoride riboswitch 分子名称: riboswitch (47-MER) 著者 Zhang, Q, Zhao, B. 登録日 2016-06-14 公開日 2017-07-19 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 An excited state underlies gene regulation of a transcriptional riboswitch. Nat. Chem. Biol., 13, 2017
3IVN	Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon 分子名称: A-riboswitch, BROMIDE ION, MAGNESIUM ION 著者 Delfosse, V, Dagenais, P, Chausse, D, Di Tomasso, G, Legault, P. 登録日 2009-09-01 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Riboswitch structure: an internal residue mimicking the purine ligand. Nucleic Acids Res., 38, 2010
3SUY	Crystal structure of THF riboswitch, unbound status 分子名称: riboswitch 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2011-07-11 公開日 2011-09-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.21 Å) 主引用文献 Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch. Proc.Natl.Acad.Sci.USA, 108, 2011
5NWQ	The structure of the thermobifida fusca guanidine III riboswitch with guanidine. 分子名称: GUANIDINE, Guanidine III riboswitch, MAGNESIUM ION, ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-05-08 公開日 2017-10-18 最終更新日 2017-11-29 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5NZD	The structure of the thermobifida fusca guanidine III riboswitch in space group P212121. 分子名称: ACETATE ION, MAGNESIUM ION, SODIUM ION, ... 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-05-13 公開日 2017-10-18 最終更新日 2017-11-29 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 Structure of the Guanidine III Riboswitch. Cell Chem Biol, 24, 2017
5SWD	Structure of the adenine riboswitch aptamer domain in an intermediate-bound state 分子名称: ADENINE, MAGNESIUM ION, Vibrio vulnificus strain 93U204 chromosome II, ... 著者 Stagno, J.R, Wang, Y.-X, Liu, Y, Bhandari, Y.R, Conrad, C.E, Nelson, G, Li, C, Wendel, D.R, White, T.A, Barty, A, Tuckey, R.A, Zatsepin, N.A, Grant, T.D, Fromme, P, Tan, K, Ji, X, Spence, J.C.H. 登録日 2016-08-08 公開日 2016-11-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature, 541, 2017
5SWE	Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography 分子名称: ADENINE, Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain 著者 Stagno, J.R, Wang, Y.-X, Liu, Y, Bhandari, Y.R, Conrad, C.E, Nelson, G, Li, C, Wendel, D.R, White, T.A, Barty, A, Tuckey, R.A, Zatsepin, N.A, Grant, T.D, Fromme, P, Tan, K, Ji, X, Spence, J.C.H. 登録日 2016-08-08 公開日 2016-11-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature, 541, 2017
8FZA	Class I type III preQ1 riboswitch from E. coli 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MANGANESE (II) ION, PreQ1 Riboswitch (30-MER) 著者 Wedekind, J.E, Schroeder, G.M, Jenkins, J.L. 登録日 2023-01-27 公開日 2023-08-30 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and function analysis of a type III preQ 1 -I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence. J.Biol.Chem., 299, 2023
8FB3	PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MAGNESIUM ION, RNA (34-MER) Riboswitch 著者 Wedekind, J.E, Schroeder, G.M, Jenkins, J.L. 登録日 2022-11-29 公開日 2023-02-22 最終更新日 2023-03-29 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A riboswitch separated from its ribosome-binding site still regulates translation. Nucleic Acids Res., 51, 2023
8GXB	Crystal structure of NAD+ -II riboswitch in complex with NAD+ 分子名称: MAGNESIUM ION, NAD+ II riboswitch, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Xu, X.C, Ren, A.M. 登録日 2022-09-19 公開日 2023-01-18 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure-based investigations of the NAD+-II riboswitch. Nucleic Acids Res., 51, 2023
4FE5	Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine 分子名称: ACETATE ION, COBALT HEXAMMINE(III), HYPOXANTHINE, ... 著者 Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T. 登録日 2012-05-29 公開日 2012-06-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature, 432, 2004
3IQR	SAM-I riboswitch from T. tencongensis variant A94G bound with SAM 分子名称: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I riboswitch 著者 Montange, R.K, Batey, R.T. 登録日 2009-08-20 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure, 18, 2010
3IQN	Free-state structural transitions of the SAM-I riboswitch 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Montange, R.K, Batey, R.T. 登録日 2009-08-20 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure, 18, 2010
3IQP	SAM-I riboswitch from T. tencongensis variant A94G apo form 分子名称: BARIUM ION, SAM-I riboswitch 著者 Montange, R.K, Batey, R.T. 登録日 2009-08-20 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure, 18, 2010
3Q51	Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state. 分子名称: MAGNESIUM ION, PREQ1 RIBOSWITCH, SULFATE ION 著者 Wedekind, J.E, Jenkins, J.L, Krucinska, J. 登録日 2010-12-26 公開日 2011-05-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. J.Biol.Chem., 286, 2011
3Q50	Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, PREQ1 RIBOSWITCH, SULFATE ION 著者 Jenkins, J.L, Krucinska, J, Wedekind, J.E. 登録日 2010-12-26 公開日 2011-05-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. J.Biol.Chem., 286, 2011
2GDI	Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate 分子名称: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ... 著者 Serganov, A. 登録日 2006-03-16 公開日 2006-07-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature, 441, 2006
2GIS	Structure of the S-adenosylmethionine riboswitch mRNA regulatory element 分子名称: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Montange, R.K, Batey, R.T. 登録日 2006-03-29 公開日 2006-07-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature, 441, 2006
2HOK	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions 分子名称: CALCIUM ION, THIAMINE DIPHOSPHATE, thi-box riboswitch 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
2HOM	Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate 分子名称: CALCIUM ION, MAGNESIUM ION, THIAMIN PHOSPHATE, ... 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
2HOL	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions 分子名称: BARIUM ION, CALCIUM ION, MAGNESIUM ION, ... 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
2HOJ	Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions 分子名称: MAGNESIUM ION, MANGANESE (II) ION, THIAMINE DIPHOSPHATE, ... 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
2HOP	Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine 分子名称: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM, CALCIUM ION, MAGNESIUM ION, ... 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
2HOO	Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine 分子名称: CALCIUM ION, S-BENZOYLTHIAMINE O-MONOPHOSPHATE, thi-box riboswitch 著者 Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2006-07-14 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006
3GCA	The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain 分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, PreQ1 riboswitch, SULFATE ION 著者 Spitale, R.C, Wedekind, J.E. 登録日 2009-02-21 公開日 2009-03-03 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain. J.Biol.Chem., 284, 2009

 

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