PDB: 1416 resultsInfo pagesStatus searchChemie searchBIRD

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5TLA	Crystal structure of mouse ISG15 Descriptor: Ubiquitin-like protein ISG15 Authors: Goodwin, O.Y, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D. Deposit date: 2016-10-10 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.244 Å) Cite: Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species. J. Mol. Biol., 429, 2017
5TOG	Room temperature structure of ubiquitin variant u7ub25.2540 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5TR5	Solution structure of Serine 65 phosphorylated UBL domain from parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Aguirre, J.D, Dunkerley, K.M, Mercier, P, Shaw, G.S. Deposit date: 2016-10-25 Release date: 2016-12-21 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5TOF	Room temperature structure of ubiquitin variant u7ub25 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5UJL	Representative 1-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2017-10-25 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 Descriptor: NITRATE ION, Polyubiquitin Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-04-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5VSZ	Structure of the Ubl domain of Sacsin mutant L78M Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-15 Release date: 2017-05-31 Last modified: 2018-08-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5W46	Structure of S65D Phosphomimetic Ubiquitin Refined at 1.2 Angstroms Resolution Descriptor: MAGNESIUM ION, Polyubiquitin-B Authors: Kazansky, Y, Singh, R.K, Fushman, D. Deposit date: 2017-06-09 Release date: 2017-07-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions. Sci Rep, 8, 2018
5VSX	Structure of the Ubl domain of Sacsin Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-13 Release date: 2017-05-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5VF0	Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2017-04-06 Release date: 2017-05-17 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5X3O	Crystal structure of p-DiUb-S65-COOH Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Structure of p-DiUb-S65-COOH at 2.19 Angstroms resolution. To Be Published
5X3N	Crystal structure of DiUb-K6 Descriptor: PHOSPHATE ION, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution. To Be Published
5XIT	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II Descriptor: E3 ubiquitin-protein ligase RNF168, GLYCEROL, PRASEODYMIUM ION, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
6JL3	Crystal Structure of the UBL domain of Plasmodium Falciparum Dsk2 Descriptor: Ubiquitin domain-containing protein DSK2,putative Authors: Gupta, I, Khan, S. Deposit date: 2019-03-03 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.303 Å) Cite: The recognition of proteasomal receptors by Plasmodium falciparum DSK2. Mol.Biochem.Parasitol., 236, 2020
6K2U	Crystal structure of Thr66 ADP-ribosylated ubiquitin Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, MAGNESIUM ION, Polyubiquitin-C, ... Authors: Wang, X, Zhou, Y, Zhu, Y. Deposit date: 2019-05-15 Release date: 2020-03-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.554 Å) Cite: Threonine ADP-Ribosylation of Ubiquitin by a Bacterial Effector Family Blocks Host Ubiquitination. Mol.Cell, 78, 2020
6K4I	The partially disordered conformation of ubiquitin (Q41N variant) Descriptor: ubiquitin Authors: Wakamoto, T, Ikeya, T, Kitazawa, S, Baxter, N.J, Williamson, M.P, Kitahara, R. Deposit date: 2019-05-24 Release date: 2019-10-30 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Paramagnetic relaxation enhancement-assisted structural characterization of a partially disordered conformation of ubiquitin. Protein Sci., 28, 2019
6KNA	Viral Ubiquitin from Autographa californica Nucleo Polyhedrosis Virus Descriptor: Viral ubiquitin Authors: Negi, H, Reddy, P.P, Das, R. Deposit date: 2019-08-05 Release date: 2020-06-17 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes. Biochem.J., 477, 2020
6KOW	Retracted state of S65/T66 double-phosphorylated ubiquitin Descriptor: Polyubiquitin-B Authors: Dong, X, Tang, C. Deposit date: 2019-08-13 Release date: 2019-08-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch. Protein Cell, 10, 2019
6KOX	Relaxed state of S65/T66 double-phosphorylated ubiquitin Descriptor: Polyubiquitin-B Authors: Dong, X, Tang, C. Deposit date: 2019-08-13 Release date: 2019-08-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch. Protein Cell, 10, 2019
6MDH	X-ray crystal structure of ISG15 from Myotis davidii Descriptor: Ubiquitin-like protein ISG15 Authors: Goodwin, O.Y, Langley, C.A, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D. Deposit date: 2018-09-04 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Structure of interferon-stimulated gene product 15 (ISG15) from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement. Acta Crystallogr D Struct Biol, 75, 2019
5XDP	K11/48-branched teraubiquitin Descriptor: D-ubiquitin, ubiquitin-B Authors: Liang, L, Gao, S, Tang, S. Deposit date: 2017-03-28 Release date: 2017-04-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.376 Å) Cite: K11/48-branched teraubiquitin To Be Published
5XIS	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Descriptor: E3 ubiquitin-protein ligase RNF168, MAGNESIUM ION, Ubiquitin-40S ribosomal protein S27a, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5XK4	Retracted state of S65-phosphorylated ubiquitin Descriptor: Polyubiquitin-B Authors: Dong, X, Gong, Z, Qin, L.Y, Ran, M.L, Zhang, C.L, Liu, K, Liu, Z, Zhang, W.P, Tang, C. Deposit date: 2017-05-05 Release date: 2017-06-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Ubiquitin S65 phosphorylation engenders a pH-sensitive conformational switch Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XPK	Crystal structure of ubiquitin-k6mimic Descriptor: D-ubiquitin, Ubiquitin Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-06-03 Release date: 2017-07-19 Method: X-RAY DIFFRACTION (2.274 Å) Cite: Structure of ubiquitin-k6mimic at 2.27 Angstroms resolution. To Be Published

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