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4YTZ
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BU of 4ytz by Molmil
Rat xanthine oxidoreductase, C-terminal deletion protein variant, crystal grown without dithiothreitol
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2015-03-18
Release date:2015-04-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase
Febs J., 282, 2015
4ZOH
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BU of 4zoh by Molmil
Crystal structure of glyceraldehyde oxidoreductase
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nishimasu, H, Fushinobu, S, Wakagi, T.
Deposit date:2015-05-06
Release date:2016-02-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities through Unique Subunit Assemblies.
Plos One, 11, 2016
4YRW
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BU of 4yrw by Molmil
rat xanthine oxidoreductase, C-terminal deletion protein variant
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K.
Deposit date:2015-03-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase
Febs J., 282, 2015
2N0S
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BU of 2n0s by Molmil
HADDOCK model of ferredoxin and [FeFe] hydrogenase complex
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Fe-hydrogenase, Ferredoxin, ...
Authors:Rumpel, S, Siebel, J, Fares, C, Reijerse, E, Lubitz, W.
Deposit date:2015-03-13
Release date:2015-06-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insight into the Complex of Ferredoxin and [FeFe] Hydrogenase from Chlamydomonas reinhardtii.
Chembiochem, 16, 2015
2PIA
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BU of 2pia by Molmil
PHTHALATE DIOXYGENASE REDUCTASE: A MODULAR STRUCTURE FOR ELECTRON TRANSFER FROM PYRIDINE NUCLEOTIDES TO [2FE-2S]
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, PHTHALATE DIOXYGENASE REDUCTASE
Authors:Correll, C.C, Batie, C.J, Ballou, D.P, Ludwig, M.L.
Deposit date:1993-02-15
Release date:1993-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S].
Science, 258, 1992
2PVG
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BU of 2pvg by Molmil
Crystal srtucture of the binary complex between ferredoxin and ferredoxin:thioredoxin reductase
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, Ferredoxin-thioredoxin reductase, ...
Authors:Dai, S.
Deposit date:2007-05-09
Release date:2007-07-10
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural snapshots along the reaction pathway of ferredoxin-thioredoxin reductase.
Nature, 448, 2007
7WFF
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BU of 7wff by Molmil
Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Pan, X.W, Li, M.
Deposit date:2021-12-26
Release date:2022-03-16
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana.
Mol Plant, 15, 2022
1WYG
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BU of 1wyg by Molmil
Crystal Structure of a Rat Xanthine Dehydrogenase Triple Mutant (C535A, C992R and C1324S)
Descriptor: 2-HYDROXYBENZOIC ACID, ACETIC ACID, CALCIUM ION, ...
Authors:Nishino, T, Okamoto, K, Kawaguchi, Y, Hori, H, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2005-02-14
Release date:2005-05-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Mechanism of the Conversion of Xanthine Dehydrogenase to Xanthine Oxidase: IDENTIFICATION OF THE TWO CYSTEINE DISULFIDE BONDS AND CRYSTAL STRUCTURE OF A NON-CONVERTIBLE RAT LIVER XANTHINE DEHYDROGENASE MUTANT
J.Biol.Chem., 280, 2005
7WZN
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BU of 7wzn by Molmil
PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin
Descriptor: CHLOROPHYLL A, CHLOROPHYLL A ISOMER, CHLOROPHYLL B, ...
Authors:Kurisu, G, Gerle, C, Mitsuoka, K, Kawamoto, A, Tanaka, H.
Deposit date:2022-02-18
Release date:2023-02-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin.
Biochim Biophys Acta Bioenerg, 1864, 2023
7C3A
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BU of 7c3a by Molmil
Ferredoxin reductase in carbazole 1,9a-dioxygenase
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ashikawa, Y, Fujimoto, Z, Nojiri, H.
Deposit date:2020-05-11
Release date:2021-05-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3.
Acta Crystallogr D Struct Biol, 77, 2021
7C3B
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BU of 7c3b by Molmil
Ferredoxin reductase in carbazole 1,9a-dioxygenase (FAD apo form)
Descriptor: ACETATE ION, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ashikawa, Y, Fujimoto, Z, Nojiri, H.
Deposit date:2020-05-11
Release date:2021-05-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3.
Acta Crystallogr D Struct Biol, 77, 2021
7XK4
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BU of 7xk4 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 2
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
Deposit date:2022-04-19
Release date:2022-07-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK5
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BU of 7xk5 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 3
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
Deposit date:2022-04-19
Release date:2022-07-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK6
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BU of 7xk6 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with aurachin D-42
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aurachin D, CALCIUM ION, ...
Authors:Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
Deposit date:2022-04-19
Release date:2022-07-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK3
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BU of 7xk3 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 1
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
Deposit date:2022-04-19
Release date:2022-07-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
1VLB
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BU of 1vlb by Molmil
STRUCTURE REFINEMENT OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS AT 1.28 A
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), ALDEHYDE OXIDOREDUCTASE, CHLORIDE ION, ...
Authors:Rebelo, J.M, Dias, J.M, Huber, R, Moura, J.J.G, Romao, M.J.
Deposit date:2004-07-20
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Structure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 A
J.Biol.Inorg.Chem., 6, 2001
7WG5
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BU of 7wg5 by Molmil
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Pan, X.W, Li, M.
Deposit date:2021-12-28
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana.
Mol Plant, 15, 2022
1RM6
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BU of 1rm6 by Molmil
Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-hydroxybenzoyl-CoA reductase alpha subunit, ...
Authors:Unciuleac, M, Warkentin, E, Page, C.C, Dutton, P.L, Boll, M, Ermler, U.
Deposit date:2003-11-27
Release date:2004-12-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a Xanthine Oxidase-Related 4-Hydroxybenzoyl-CoA Reductase with an Additional [4Fe-4S] Cluster and an Inverted Electron Flow
Structure, 12, 2004
7Y7A
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BU of 7y7a by Molmil
In situ double-PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.
Descriptor: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (2S)-2,3-dihydroxypropyl octadecanoate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:You, X, Zhang, X, Cheng, J, Xiao, Y.N, Sun, S, Sui, S.F.
Deposit date:2022-06-22
Release date:2023-02-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Nature, 616, 2023
7Y5E
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BU of 7y5e by Molmil
In situ single-PBS-PSII-PSI-LHCs megacomplex.
Descriptor: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (2S)-2,3-dihydroxypropyl octadecanoate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:You, X, Zhang, X, Cheng, J, Xiao, Y.N, Sui, S.F.
Deposit date:2022-06-17
Release date:2023-02-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Nature, 616, 2023
7XK7
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BU of 7xk7 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with korormicin
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
Deposit date:2022-04-19
Release date:2022-07-20
Last modified:2022-08-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
1V97
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BU of 1v97 by Molmil
Crystal Structure of Bovine Milk Xanthine Dehydrogenase FYX-051 bound form
Descriptor: 4-(5-PYRIDIN-4-YL-1H-1,2,4-TRIAZOL-3-YL)PYRIDINE-2-CARBONITRILE, ACETIC ACID, CALCIUM ION, ...
Authors:Okamoto, K, Matsumoto, K, Hille, R, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2004-01-21
Release date:2004-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The crystal structure of xanthine oxidoreductase during catalysis: Implications for reaction mechanism and enzyme inhibition.
Proc.Natl.Acad.Sci.USA, 101, 2004
7DQX
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BU of 7dqx by Molmil
Crystal structure of xanthine dehydrogenase family protein
Descriptor: 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, 6-hydroxypseudooxynicotine dehydrogenase complex subunit beta, 6-hydroxypseudooxynicotine dehydrogenase complex subunit gamma, ...
Authors:Lei, W.
Deposit date:2020-12-24
Release date:2022-01-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.44 Å)
Cite:crystal structure of xanthine dehydrogenase family protein
To Be Published
7DGZ
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BU of 7dgz by Molmil
Activity optimized complex I (closed form)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Jeon, T.J, Lee, S.G, Yoo, S.H, Ryu, J.H, Kim, D.S, Hyun, J.K, Kim, H.M, Ryu, S.E.
Deposit date:2020-11-12
Release date:2022-05-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A Dynamic Substrate Pool Revealed by cryo-EM of a Lipid-Preserved Respiratory Supercomplex.
Antioxid.Redox Signal., 2022
7DH0
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BU of 7dh0 by Molmil
Activity optimized complex I (open form)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Jeon, T.J, Lee, S.G, Yoo, S.H, Ryu, J.H, Kim, D.S, Hyun, J.K, Kim, H.M, Ryu, S.E.
Deposit date:2020-11-12
Release date:2022-05-18
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:A Dynamic Substrate Pool Revealed by cryo-EM of a Lipid-Preserved Respiratory Supercomplex.
Antioxid.Redox Signal., 2022

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