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5EAZ
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BU of 5eaz by Molmil
crystal form I of YfiB belonging to space groups P21
Descriptor: SULFATE ION, YfiB
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5JIR
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BU of 5jir by Molmil
Crystal structure of Treponema pallidum protein Tp0624
Descriptor: CHLORIDE ION, GLYCEROL, OOP family OmpA-OmpF porin
Authors:Parker, M.L, Boulanger, M.J.
Deposit date:2016-04-22
Release date:2016-11-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains.
Plos One, 11, 2016
5LKW
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BU of 5lkw by Molmil
Crystal structure of the peptidoglycan-associated lipoprotein (Pal) from Burkholderia cepacia in complex with DAP
Descriptor: 2,6-DIAMINOPIMELIC ACID, Putative OmpA family lipoprotein
Authors:Romano, M, Ruggiero, A, Berisio, R.
Deposit date:2016-07-25
Release date:2017-08-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Burkholderia cenocepacia peptidoglycan-associated lipoprotein is involved in epithelial cell attachment and elicitation of inflammation.
Cell. Microbiol., 19, 2017
5Y3Z
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BU of 5y3z by Molmil
Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal form 1)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ARGININE, IMIDAZOLE, ...
Authors:Takao, M, Kojima, S, Sakuma, M, Homma, M, Imada, K.
Deposit date:2017-07-31
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx.
Structure, 26, 2018
5M38
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BU of 5m38 by Molmil
Structure of the TagL peptidoglycan binding domain from EAEC T6SS
Descriptor: OmpA family protein
Authors:Cambillau, C, Nguyen, V.S, Spinelli, S, Cascales, E.
Deposit date:2016-10-14
Release date:2018-02-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the TagL peptidoglycan binding domain from EAEC T6SS
To Be Published
3WPW
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BU of 3wpw by Molmil
Structure of PomBc5, a periplasmic fragment of PomB from Vibrio
Descriptor: ACETATE ION, PomB
Authors:Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
5U1H
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BU of 5u1h by Molmil
Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa
Descriptor: (2R,6S)-2-amino-6-(carboxyamino)-7-{[(1R)-1-carboxyethyl]amino}-7-oxoheptanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Watanabe, N, Stogios, P.J, Skarina, T, Wawrzak, Z, Di Leo, R, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-11-28
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa
To be published
4ERH
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BU of 4erh by Molmil
The crystal structure of OmpA domain of OmpA from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Descriptor: GLYCEROL, Outer membrane protein A, SULFATE ION
Authors:Tan, K, Wu, R, Jedrzejczak, R, Adkins, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2012-04-20
Release date:2012-05-02
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:The crystal structure of OmpA domain of OmpA from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
To be Published
3WPX
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BU of 3wpx by Molmil
Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus
Descriptor: PomB
Authors:Takao, M, Sakuma, M, Zhu, S, Homma, M, Kojima, S, Imada, K.
Deposit date:2014-01-17
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
Proc. Natl. Acad. Sci. U.S.A., 111, 2014
5VES
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BU of 5ves by Molmil
The 2.4A crystal structure of OmpA domain of OmpA from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Descriptor: Outer membrane protein A, SULFATE ION
Authors:Tan, K, Wu, R, Jedrzejczak, R, Adkins, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2017-04-05
Release date:2017-04-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into PG-binding, conformational change, and dimerization of the OmpA C-terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferi.
Protein Sci., 26, 2017
3S02
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BU of 3s02 by Molmil
The crystal structure of the periplasmic domain of Helicobacter pylori MotB (residues 103-256)
Descriptor: Motility protein B
Authors:Roujeinikova, A.R.
Deposit date:2011-05-12
Release date:2012-03-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Role of the MotB linker in the assembly and activation of the bacterial flagellar motor.
Acta Crystallogr.,Sect.D, 67, 2011
4G4Y
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BU of 4g4y by Molmil
Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii
Descriptor: ALANINE, Outer membrane protein Omp38, SULFATE ION
Authors:Lee, W.C, Song, J.H, Park, J.S, Kim, H.Y.
Deposit date:2012-07-16
Release date:2013-07-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enantiomer-dependent amino acid binding affinity of OmpA-like domains from Acinetobacter baumannii peptidoglycan-associated lipoprotein and OmpA
To be Published
3TD5
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BU of 3td5 by Molmil
Crystal structure of OmpA-like domain from Acinetobacter baumannii in complex with L-Ala-gamma-D-Glu-m-DAP-D-Ala-D-Ala
Descriptor: CHLORIDE ION, Outer membrane protein omp38, peptide(L-Ala-gamma-D-Glu-m-DAP-D-Ala-D-Ala)
Authors:Park, J.S, Lee, W.C, Song, J.H, Kim, H.Y.
Deposit date:2011-08-10
Release date:2011-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the gram-negative bacterial outer membrane
Faseb J., 26, 2012
3TD4
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BU of 3td4 by Molmil
Crystal structure of OmpA-like domain from Acinetobacter baumannii in complex with diaminopimelate
Descriptor: 2,6-DIAMINOPIMELIC ACID, Outer membrane protein omp38
Authors:Park, J.S, Lee, W.C, Song, J.H, Kim, H.Y.
Deposit date:2011-08-10
Release date:2011-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the gram-negative bacterial outer membrane
Faseb J., 26, 2012
3TD3
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BU of 3td3 by Molmil
Crystal structure of OmpA-like domain from Acinetobacter baumannii in complex with glycine
Descriptor: GLYCINE, Outer membrane protein omp38
Authors:Park, J.S, Lee, W.C, Song, J.H, Kim, H.Y.
Deposit date:2011-08-10
Release date:2011-10-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the gram-negative bacterial outer membrane
Faseb J., 26, 2012
2ZOV
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BU of 2zov by Molmil
Structure of the periplasmic domain of MotB from Salmonella (crystal form I)
Descriptor: Chemotaxis protein motB
Authors:Imada, K, Kojima, S, Namba, K, Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
5WTP
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BU of 5wtp by Molmil
Crystal structure of the C-terminal domain of outer membrane protein A (OmpA) from Capnocytophaga gingivalis
Descriptor: OmpA family protein, SULFATE ION
Authors:Dai, S, Tan, K, Ye, S, Zhang, R.
Deposit date:2016-12-13
Release date:2017-12-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of thrombospondin type 3 repeats in bacterial outer membrane protein A reveals its intra-repeat disulfide bond-dependent calcium-binding capability.
Cell Calcium, 66, 2017
4G88
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BU of 4g88 by Molmil
Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii
Descriptor: 2,6-DIAMINOPIMELIC ACID, Outer membrane protein Omp38, S,R MESO-TARTARIC ACID
Authors:Lee, W.C, Song, J.H, Park, J.S, Kim, H.Y.
Deposit date:2012-07-22
Release date:2013-07-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enantiomer-dependent amino acid binding affinity of OmpA-like domains from Acinetobacter baumannii peptidoglycan-associated lipoprotein and OmpA
to be published
4G4Z
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BU of 4g4z by Molmil
Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii
Descriptor: D-ALANINE, Outer membrane protein Omp38, SULFATE ION
Authors:Lee, W.C, Song, J.H, Park, J.S, Kim, H.Y.
Deposit date:2012-07-16
Release date:2013-07-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enantiomer-dependent amino acid binding affinity of OmpA-like domains from Acinetobacter baumannii peptidoglycan-associated lipoprotein and OmpA
To be Published
4B5C
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BU of 4b5c by Molmil
Crystal structure of the peptidoglycan-associated lipoprotein from Burkholderia pseudomallei
Descriptor: ACETATE ION, PUTATIVE OMPA FAMILY LIPOPROTEIN
Authors:Gourlay, L.J, Peri, C, Conchillo-Sole, O, Ferrer-Navarro, M, Gori, A, Longhi, R, Rinchai, D, Lertmemongkolchai, G, Lassaux, P, Daura, X, Colombo, G, Bolognesi, M.
Deposit date:2012-08-03
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Exploiting the Burkholderia Pseudomallei Acute Phase Antigen Bpsl2765 for Structure-Based Epitope Discovery/Design in Structural Vaccinology.
Chem.Biool., 20, 2013
4B62
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BU of 4b62 by Molmil
The structure of the cell wall anchor of the T6SS from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, TSSL1
Authors:Robb, C.S, Carlson, M, Nano, F.E, Boraston, A.B.
Deposit date:2012-08-08
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structure of the Periplasmic Peptidoglycan Binding Anchor of a T6Ss from Pseudomonas Aeruginosa.
To be Published
2ZVY
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BU of 2zvy by Molmil
Structure of the periplasmic domain of MotB from Salmonella (crystal form II)
Descriptor: Chemotaxis protein motB
Authors:Kojima, S, Homma, M, Namba, K, Imada, K.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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BU of 2zvz by Molmil
Structure of the periplasmic domain of MotB from Salmonella (crystal form III)
Descriptor: Chemotaxis protein motB
Authors:Imada, K, Kojima, S, Namba, K, Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2LCA
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BU of 2lca by Molmil
Solution structure of the C domain of RV0899 from mycobacterium tuberculosis
Descriptor: Uncharacterized protein Rv0899/MT0922
Authors:Marassi, F, Yao, Y.
Deposit date:2011-04-26
Release date:2012-01-04
Last modified:2023-12-06
Method:SOLUTION NMR
Cite:Molecular Structure and Peptidoglycan Recognition of Mycobacterium tuberculosis ArfA (Rv0899).
J.Mol.Biol., 416, 2012
3S06
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BU of 3s06 by Molmil
The crystal structure of the periplasmic domain of Helicobacter pylori MotB (residues 97-256, P3121).
Descriptor: Motility protein B, SULFATE ION
Authors:Roujeinikova, A.R.
Deposit date:2011-05-13
Release date:2012-03-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Role of the MotB linker in the assembly and activation of the bacterial flagellar motor.
Acta Crystallogr.,Sect.D, 67, 2011

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