8CWP
| X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION | Authors: | Jones, S.P, Cook, K.H, Holmquist, M.L, Almekinder, L, DeLaney, A, Labbe, N, Perdue, J, Jackson, N, Charles, R, Pichichero, M, Kaur, R, Michel, L, Gleghorn, M.L. | Deposit date: | 2022-05-19 | Release date: | 2022-09-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Vaccine target and carrier molecule nontypeable Haemophilus influenzae protein D dimerizes like the close Escherichia coli GlpQ homolog but unlike other known homolog dimers. Proteins, 91, 2023
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4R7O
| Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... | Authors: | Kim, Y, Zhou, M, Shatsman, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) | Deposit date: | 2014-08-28 | Release date: | 2014-09-10 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.534 Å) | Cite: | Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci To be Published
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1O1Z
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4OEC
| Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 | Descriptor: | Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION | Authors: | Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S. | Deposit date: | 2014-01-13 | Release date: | 2015-01-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 To be Published
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8GHI
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8GHH
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5VUG
| Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis | Descriptor: | CALCIUM ION, GLYCEROL, Uncharacterized protein Rv2277c | Authors: | Kim, Y, Li, H, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2017-05-19 | Release date: | 2017-06-14 | Last modified: | 2017-09-20 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis To Be Published
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1T8Q
| Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, periplasmic, ... | Authors: | Zhang, R, Kim, Y, Dementieva, I, Duke, N, Stols, L, Donnelly, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2004-05-13 | Release date: | 2004-08-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli To be Published
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5T91
| Crystal structure of B. subtilis 168 GlpQ in complex with bicine | Descriptor: | BICINE, CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, ... | Authors: | Li, F.K.K, Strynadka, N.C.J. | Deposit date: | 2016-09-09 | Release date: | 2016-11-02 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component. J. Biol. Chem., 291, 2016
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1V8E
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5T9C
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3NO3
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5T9B
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3MZ2
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3KS6
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3L12
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3KS5
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1VD6
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1YDY
| Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli | Descriptor: | CALCIUM ION, GLYCEROL, Glycerophosphoryl diester phosphodiesterase | Authors: | Malashkevich, V.N, Fedorov, E, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2004-12-27 | Release date: | 2005-01-25 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli To be Published
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7E2B
| GDPD mutant complex from Pyrococcus furiosus DSM 3638 | Descriptor: | CHOLINE ION, Glycerophosphodiester phosphodiesterase, MAGNESIUM ION, ... | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | Deposit date: | 2021-02-05 | Release date: | 2022-02-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Observation of the GPC production during hydrolysis of LPC by GDPD D60A from Pyrococcus furiosus DSM 3638 To Be Published
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7E0V
| GDPD from Pyrococcus furiosus DSM 3638 | Descriptor: | Glycerophosphodiester phosphodiesterase | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | Deposit date: | 2021-01-28 | Release date: | 2022-02-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of Bomgl, a monoacylglycerol lipase from marine Bacillus To Be Published
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7E2A
| GDPD mutant from Pyrococcus furiosus DSM 3638 | Descriptor: | Glycerophosphodiester phosphodiesterase | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | Deposit date: | 2021-02-05 | Release date: | 2022-02-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Crystal structure of glycerophoshphodiester phospodiesterase D60A mutant from Pyrococcus furiosus DSM To Be Published
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1ZCC
| Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58 | Descriptor: | ACETATE ION, SULFATE ION, glycerophosphodiester phosphodiesterase | Authors: | Krishnamurthy, N.R, Kumaran, D, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2005-04-11 | Release date: | 2005-05-03 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins, 65, 2006
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7YM0
| Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+ | Descriptor: | CALCIUM ION, Lysoplasmalogenase | Authors: | Yasutake, Y, Sakasegawa, S, Sugimori, D, Murayama, K. | Deposit date: | 2022-07-27 | Release date: | 2023-01-04 | Method: | X-RAY DIFFRACTION (2.91 Å) | Cite: | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668. Biosci.Biotechnol.Biochem., 87, 2022
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7YMQ
| Crystal structure of lysoplasmalogen specific phopholipase D, F211L mutant | Descriptor: | Lysoplasmalogenase | Authors: | Murayama, K, Kato-Murayama, M, Sugimori, D, Shirouzu, M, Hamana, H. | Deposit date: | 2022-07-29 | Release date: | 2023-02-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668. Biosci.Biotechnol.Biochem., 87, 2022
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