PDB: 49 件ウェブページステータス検索Chemie searchBIRD

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8CMN	18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein 分子名称: DNA-binding protein 7d, N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide 著者 Deepak, D, Corvaglia, V, Wu, J, Huc, I. 登録日 2023-02-20 公開日 2023-07-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein To Be Published
2XIW	Crystal structure of the Sac7d-derived IgG1-binder C3-C24S 分子名称: CHLORIDE ION, DNA-BINDING PROTEIN 7D, SULFATE ION 著者 Bellinzoni, M, Colinet, S, Behar, G, Alzari, P.M, Pecorari, F. 登録日 2010-07-01 公開日 2011-07-13 最終更新日 2013-04-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Tolerance of the Archaeal Sac7D Scaffold Protein to Alternative Library Designs: Characterization of Anti-Immunoglobulin G Affitins. Protein Eng.Des.Sel., 26, 2013
1JIC	SOLUTION NMR STRUCTURE OF RECOMBINANT SSO7D WITH RNASE ACTIVITY, MINIMIZED AVERAGE STRUCTURE 分子名称: SSO7D 著者 Consonni, R, Santomo, L, Zetta, L. 登録日 1998-07-20 公開日 1998-10-14 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 A single-point mutation in the extreme heat- and pressure-resistant sso7d protein from sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core. Biochemistry, 38, 1999
2CVR	NMR solution structure of sso7d mutant, K12L, 12 conformers 分子名称: DNA-binding protein 7a 著者 Arosio, I, Recca, T, Consonni, R, Alberti, E, Fusi, P, Zetta, L. 登録日 2005-06-13 公開日 2006-08-29 最終更新日 2021-11-10 実験手法 SOLUTION NMR 主引用文献 Structural Determinants Responsible for the Thermostability of Sso7d and its Single Point Mutants To be Published
1SAP	HYPERTHERMOPHILE PROTEIN, RELAXATION MATRIX REFINEMENT STRUCTURE 分子名称: SAC7D 著者 Edmondson, S.P, Shriver, J.W. 登録日 1995-04-25 公開日 1995-09-15 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA-binding protein Sac7d from the hyperthermophile Sulfolobus acidocaldarius. Biochemistry, 34, 1995
5GWV	Structure of MoeN5-Sso7d fusion protein in complex with a substrate analogue 分子名称: (2R)-3-dimethoxyphosphoryloxy-2-[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propanoic acid, MoeN5,DNA-binding protein 7d 著者 Ko, T.-P, Guo, R.-T, Chen, C.-C. 登録日 2016-09-14 公開日 2017-09-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism. Biochem. Biophys. Res. Commun., 511, 2019
5GWW	Structure of MoeN5-Sso7d fusion protein in complex with a permethylated substrate analogue 分子名称: MoeN5,DNA-binding protein 7d, methyl (2R)-3-dimethoxyphosphoryloxy-2-[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propanoate 著者 Ko, T.-P, Guo, R.-T, Chen, C.-C. 登録日 2016-09-14 公開日 2017-09-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism. Biochem. Biophys. Res. Commun., 511, 2019
1BBX	NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE 分子名称: DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)-3'), DNA-BINDING PROTEIN 7D 著者 Agback, P, Baumann, H, Knapp, S, Ladenstein, R, Hard, T. 登録日 1998-04-24 公開日 1998-10-14 最終更新日 2022-02-16 実験手法 SOLUTION NMR 主引用文献 Architecture of Nonspecific Protein-DNA Interactions in the Sso7D-DNA Complex Nat.Struct.Biol., 5, 1998
1AZQ	HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX 分子名称: DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) 著者 Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J. 登録日 1997-11-20 公開日 1999-01-13 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. Nature, 392, 1998
6J8W	Structure of MOEN5-SSO7D fusion protein in complex with lig 1 分子名称: (2S)-3-dimethoxyphosphoryloxy-2-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propanoic acid, MoeN5,DNA-binding protein 7d 著者 Ko, T.P, Zhang, L.L, Chen, C.C, Guo, R.T. 登録日 2019-01-21 公開日 2019-04-17 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism. Biochem. Biophys. Res. Commun., 511, 2019
6J8V	Structure of MOEN5-SSO7D fusion protein in complex with ligand 2 分子名称: FARNESYL, MoeN5,DNA-binding protein 7d 著者 Ko, T.P, Zhang, L.L, Chen, C.C, Guo, R.T. 登録日 2019-01-21 公開日 2019-04-17 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism. Biochem. Biophys. Res. Commun., 511, 2019
8Q2M	18mer DNA mimic Foldamer with an Aliphatic linker in complex with Sac7d V26A/M29A protein 分子名称: DNA mimic Foldamer, DNA-binding protein 7b 著者 Deepak, D, Corvaglia, V, Wu, J, Huc, I. 登録日 2023-08-02 公開日 2023-08-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.21 Å) 主引用文献 18mer DNA mimic foldamer with Alphatic linker in complex with Sac7d wild protein. To Be Published
8QPC	18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein 分子名称: DNA-binding protein 7b, N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide 著者 Deepak, D, Corvaglia, V, Wu, J, Huc, I. 登録日 2023-10-01 公開日 2023-11-08 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 DNA-Mimic Foldamer Recognition of a Chromosomal Protein To Be Published
5B0J	Structure of MoeN5-Sso7d fusion protein in complex with beta-undecyl maltoside 分子名称: MoeN5,DNA-binding protein 7d, UNDECYL-MALTOSIDE 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-10-30 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
5B0M	Structure of MoeN5-Sso7d fusion protein in complex with beta-dodecyl maltoside 分子名称: DODECYL-BETA-D-MALTOSIDE, MoeN5,DNA-binding protein 7d 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-11-02 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
1AZP	HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX 分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) 著者 Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J. 登録日 1997-11-19 公開日 1999-01-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. Nature, 392, 1998
5B0I	Structure of MoeN5-Sso7d fusion protein in complex with beta-octyl glucoside 分子名称: MoeN5,DNA-binding protein 7d, octyl beta-D-glucopyranoside 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-10-30 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
5B02	Structure of the prenyltransferase MoeN5 with a fusion protein tag of Sso7d 分子名称: MoeN5,DNA-binding protein 7d 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-10-27 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
1BF4	CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX 分子名称: DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3'), PROTEIN (CHROMOSOMAL PROTEIN SSO7D) 著者 Su, S, Gao, Y.-G, Robinson, H, Padmanabhan, S, Lim, L, Shriver, J.W, Wang, A.H.-J. 登録日 1998-05-27 公開日 1999-11-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Nat.Struct.Biol., 5, 1998
5B03	Structure of MoeN5-Sso7d fusion protein in complex with geranyl pyrophosphate 分子名称: GERANYL DIPHOSPHATE, MoeN5,DNA-binding protein 7d 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-10-27 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
1B4O	NMR STUDY OF SSO7D MUTANT (F31A) MINIMIZED AVERAGE STRUCTURE 分子名称: ENDORIBONUCLEASE P2 著者 Consonni, R, Santomo, L, Zetta, L. 登録日 1998-12-24 公開日 2000-01-05 最終更新日 2022-02-16 実験手法 SOLUTION NMR 主引用文献 A single-point mutation in the extreme heat- and pressure-resistant sso7d protein from sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core. Biochemistry, 38, 1999
5B0L	Structure of MoeN5-Sso7d fusion protein in complex with beta-nonyl glucoside 分子名称: MoeN5,DNA-binding protein 7d, nonyl beta-D-glucopyranoside 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T, Oldfield, E.O. 登録日 2015-11-02 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
5B0K	Structure of MoeN5-Sso7d fusion protein in complex with beta-decyl maltoside 分子名称: DECYL-BETA-D-MALTOPYRANOSIDE, MoeN5,DNA-binding protein 7d 著者 Ko, T.-P, Zhang, L, Chen, C.-C, Guo, R.-T. 登録日 2015-10-30 公開日 2016-03-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl., 55, 2016
1BNZ	SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX 分子名称: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3', DNA-BINDING PROTEIN 7A 著者 Gao, Y.-G, Su, S.-Y, Robinson, H, Padmanabhan, S, Lim, L, Mccrary, B.S, Edmondos, S.P, Shrive, J.W, Wang, A.H.-J. 登録日 1998-07-31 公開日 1998-11-11 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Nat.Struct.Biol., 5, 1998
1CA5	INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA 分子名称: 5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3', CHROMOSOMAL PROTEIN SAC7D 著者 Su, S, Gao, Y.-G, Robinson, H, Shriver, J.W, Wang, A.H.-J. 登録日 1999-02-23 公開日 2000-02-23 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs J.Mol.Biol., 303, 2000

 

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