6G59
Structure of the alanine racemase from Staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0005829 | cellular_component | cytosol |
A | 0006522 | biological_process | alanine metabolic process |
A | 0008784 | molecular_function | alanine racemase activity |
A | 0009252 | biological_process | peptidoglycan biosynthetic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0030632 | biological_process | D-alanine biosynthetic process |
B | 0003824 | molecular_function | catalytic activity |
B | 0005829 | cellular_component | cytosol |
B | 0006522 | biological_process | alanine metabolic process |
B | 0008784 | molecular_function | alanine racemase activity |
B | 0009252 | biological_process | peptidoglycan biosynthetic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0030632 | biological_process | D-alanine biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | binding site for residue EM2 A 401 |
Chain | Residue |
A | LYS39 |
A | HOH525 |
A | TYR43 |
A | HIS168 |
A | ASN203 |
A | SER204 |
A | ARG219 |
A | GLY221 |
A | ILE222 |
A | TYR354 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue SO4 A 402 |
Chain | Residue |
A | ALA-1 |
A | GLY0 |
A | PHE1 |
A | SER2 |
A | LYS4 |
A | ASP143 |
A | THR144 |
A | ARG185 |
A | HOH552 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 403 |
Chain | Residue |
A | LYS49 |
A | ARG52 |
A | HIS76 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 404 |
Chain | Residue |
A | HIS240 |
A | PRO243 |
A | HIS335 |
A | ARG336 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 405 |
Chain | Residue |
A | ARG290 |
A | ILE291 |
A | GLN293 |
A | ARG309 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue NA A 406 |
Chain | Residue |
A | ILE154 |
A | TYR157 |
A | LEU160 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue NA A 407 |
Chain | Residue |
A | TYR227 |
A | VAL245 |
A | ASP333 |
A | ASN334 |
A | VAL342 |
A | HOH574 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue NA A 408 |
Chain | Residue |
A | SER262 |
A | SER264 |
B | GLY135 |
B | MET136 |
B | ALA170 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue CL A 409 |
Chain | Residue |
A | HIS29 |
A | PRO30 |
A | ASN31 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 402 |
Chain | Residue |
B | HIS240 |
B | PRO243 |
B | HIS335 |
B | ARG336 |
B | HOH542 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | TYR5 |
B | TYR10 |
B | ILE367 |
B | ARG374 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue NA B 404 |
Chain | Residue |
B | ILE154 |
B | TYR157 |
B | LEU160 |
B | HOH547 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue CL B 405 |
Chain | Residue |
B | HIS29 |
B | ASN31 |
B | LYS32 |
site_id | AD5 |
Number of Residues | 18 |
Details | binding site for Di-peptide EM2 B 401 and LYS B 39 |
Chain | Residue |
A | ASP313 |
B | VAL37 |
B | VAL38 |
B | ALA40 |
B | ASN41 |
B | ALA42 |
B | TYR43 |
B | ALA63 |
B | ALA65 |
B | GLU69 |
B | HIS168 |
B | ASN203 |
B | SER204 |
B | ARG219 |
B | GLY221 |
B | ILE222 |
B | TYR354 |
B | HOH536 |
Functional Information from PROSITE/UniProt
site_id | PS00395 |
Number of Residues | 11 |
Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKANAYGLG |
Chain | Residue | Details |
A | ALA36-GLY46 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | TYR265 | |
B | TYR265 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01201 |
Chain | Residue | Details |
A | ARG138 | |
B | ARG138 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | MET312 | |
B | MET312 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |