6DZ4
Crystal structure of Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta-site
GO(遺伝子オントロジー)由来の情報
鎖名 | GO(遺伝子オントロジー)id | 名前空間 | 内容 |
A | 0000162 | biological_process | tryptophan biosynthetic process |
A | 0004834 | molecular_function | tryptophan synthase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005829 | cellular_component | cytosol |
A | 0006568 | biological_process | tryptophan metabolic process |
A | 0016829 | molecular_function | lyase activity |
B | 0000162 | biological_process | tryptophan biosynthetic process |
B | 0004834 | molecular_function | tryptophan synthase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006568 | biological_process | tryptophan metabolic process |
B | 0016829 | molecular_function | lyase activity |
B | 0042802 | molecular_function | identical protein binding |
PDBデータベースに由来する情報
site_id | AC1 |
残基数 | 5 |
詳細 | binding site for residue CL A 301 |
鎖名 | 残基 |
A | HIS92 |
A | PRO93 |
A | THR94 |
A | ILE95 |
A | HOH592 |
site_id | AC2 |
残基数 | 3 |
詳細 | binding site for residue CL A 302 |
鎖名 | 残基 |
A | ARG225 |
B | CL407 |
B | HOH758 |
site_id | AC3 |
残基数 | 3 |
詳細 | binding site for residue DMS A 303 |
鎖名 | 残基 |
A | HOH499 |
A | HOH549 |
A | PHE82 |
site_id | AC4 |
残基数 | 4 |
詳細 | binding site for residue DMS A 304 |
鎖名 | 残基 |
A | GLU5 |
A | ILE148 |
A | ALA149 |
A | HOH555 |
site_id | AC5 |
残基数 | 2 |
詳細 | binding site for residue DMS A 305 |
鎖名 | 残基 |
A | ASP60 |
A | TYR175 |
site_id | AC6 |
残基数 | 2 |
詳細 | binding site for residue DMS A 306 |
鎖名 | 残基 |
A | ASN12 |
A | GLU16 |
site_id | AC7 |
残基数 | 22 |
詳細 | binding site for residue KOU B 401 |
鎖名 | 残基 |
B | HIS86 |
B | LYS87 |
B | THR110 |
B | GLY111 |
B | ALA112 |
B | GLY113 |
B | GLN114 |
B | HIS115 |
B | THR190 |
B | GLY232 |
B | GLY233 |
B | GLY234 |
B | SER235 |
B | ASN236 |
B | ALA302 |
B | GLY303 |
B | ASP305 |
B | GLU350 |
B | SER377 |
B | HOH646 |
B | HOH677 |
B | HOH681 |
site_id | AC8 |
残基数 | 5 |
詳細 | binding site for residue NA B 402 |
鎖名 | 残基 |
B | THR66 |
B | THR69 |
B | THR71 |
B | HOH693 |
B | HOH824 |
site_id | AC9 |
残基数 | 5 |
詳細 | binding site for residue NA B 403 |
鎖名 | 残基 |
B | GLY232 |
B | PHE306 |
B | SER308 |
B | HOH584 |
B | HOH690 |
site_id | AD1 |
残基数 | 2 |
詳細 | binding site for residue CL B 405 |
鎖名 | 残基 |
B | LYS219 |
B | GLU220 |
site_id | AD2 |
残基数 | 2 |
詳細 | binding site for residue CL B 406 |
鎖名 | 残基 |
B | GLY274 |
B | DMS411 |
site_id | AD3 |
残基数 | 4 |
詳細 | binding site for residue CL B 407 |
鎖名 | 残基 |
A | VAL224 |
A | ARG225 |
A | CL302 |
B | HOH755 |
site_id | AD4 |
残基数 | 2 |
詳細 | binding site for residue CL B 409 |
鎖名 | 残基 |
A | PRO138 |
B | LYS283 |
site_id | AD5 |
残基数 | 4 |
詳細 | binding site for residue DMS B 410 |
鎖名 | 残基 |
B | GLN42 |
B | ALA46 |
B | HOH902 |
B | HOH939 |
site_id | AD6 |
残基数 | 7 |
詳細 | binding site for residue DMS B 411 |
鎖名 | 残基 |
B | LEU271 |
B | ASN317 |
B | ARG363 |
B | GLU364 |
B | CL406 |
B | HOH527 |
B | HOH559 |
site_id | AD7 |
残基数 | 5 |
詳細 | binding site for residue DMS B 412 |
鎖名 | 残基 |
B | SER143 |
B | PRO144 |
B | PHE385 |
B | HIS388 |
B | HOH596 |
site_id | AD8 |
残基数 | 4 |
詳細 | binding site for residue DMS B 413 |
鎖名 | 残基 |
B | ILE262 |
B | HIS267 |
B | HIS273 |
B | HOH615 |
site_id | AD9 |
残基数 | 2 |
詳細 | binding site for residue DMS B 414 |
鎖名 | 残基 |
B | GLN36 |
B | LYS37 |
site_id | AE1 |
残基数 | 3 |
詳細 | binding site for residue DMS B 415 |
鎖名 | 残基 |
B | TYR8 |
B | GLY10 |
B | HOH899 |
site_id | AE2 |
残基数 | 4 |
詳細 | binding site for residue DMS B 416 |
鎖名 | 残基 |
B | THR3 |
B | LEU4 |
B | LEU5 |
B | ASN6 |
site_id | AE3 |
残基数 | 6 |
詳細 | binding site for residue DMS B 417 |
鎖名 | 残基 |
B | HIS357 |
B | GLU364 |
B | HOH501 |
B | HOH621 |
B | HOH879 |
B | HOH954 |
UniProtにおけるモチーフ・データベースPROSITEからの機能情報
SwissProt/UniProtに記載されている蛋白質分子機能情報
site_id | SWS_FT_FI1 |
残基数 | 1 |
詳細 | MOD_RES: N6-(pyridoxal phosphate)lysine |
鎖名 | 残基 | 詳細 |
B | LYS87 | |
A | ASP60 |
CSAにおける酵素触媒機能の情報
site_id | MCSA1 |
残基数 | 3 |
詳細 | M-CSA 383 |
鎖名 | 残基 | 詳細 |
B | LYS87 | electron pair acceptor, electron pair donor, nucleofuge, nucleophile, proton acceptor, proton donor |
B | GLU109 | |
B | SER377 | hydrogen bond donor |