2ZIY
Crystal structure of squid rhodopsin
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE RET A 380 |
Chain | Residue |
A | PHE120 |
A | CYS186 |
A | MET204 |
A | PHE209 |
A | TRP274 |
A | LYS305 |
site_id | AC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE PLM A 381 |
Chain | Residue |
A | CYS336 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PLM A 382 |
Chain | Residue |
A | CYS337 |
A | SER316 |
A | CYS336 |
Functional Information from PROSITE/UniProt
site_id | PS00237 |
Number of Residues | 17 |
Details | G_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. MSImTMAMISIDRYNvI |
Chain | Residue | Details |
A | MET121-ILE137 |
site_id | PS00238 |
Number of Residues | 17 |
Details | OPSIN Visual pigments (opsins) retinal binding site. LPvMfAKASAihNPmiY |
Chain | Residue | Details |
A | LEU299-TYR315 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 77 |
Details | TOPO_DOM: Extracellular => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | GLY2-VAL33 | |
A | LEU98-LYS109 | |
A | GLY173-SER199 | |
A | ALA284-THR293 |
site_id | SWS_FT_FI2 |
Number of Residues | 24 |
Details | TRANSMEM: Helical; Name=1 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | TYR34-LEU58 |
site_id | SWS_FT_FI3 |
Number of Residues | 66 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | PHE59-ASN70 | |
A | ASP132-ARG151 | |
A | MET225-LYS261 |
site_id | SWS_FT_FI4 |
Number of Residues | 26 |
Details | TRANSMEM: Helical; Name=2 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | MET71-PHE97 |
site_id | SWS_FT_FI5 |
Number of Residues | 21 |
Details | TRANSMEM: Helical; Name=3 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | VAL110-ILE131 |
site_id | SWS_FT_FI6 |
Number of Residues | 20 |
Details | TRANSMEM: Helical; Name=4 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | ALA152-PHE172 |
site_id | SWS_FT_FI7 |
Number of Residues | 24 |
Details | TRANSMEM: Helical; Name=5 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | ASN200-VAL224 |
site_id | SWS_FT_FI8 |
Number of Residues | 21 |
Details | TRANSMEM: Helical; Name=6 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | ILE262-LEU283 |
site_id | SWS_FT_FI9 |
Number of Residues | 21 |
Details | TRANSMEM: Helical; Name=7 => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518 |
Chain | Residue | Details |
A | PRO294-TYR315 |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | MOD_RES: N6-(retinylidene)lysine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0000269|PubMed:21906602, ECO:0000269|PubMed:26024518, ECO:0000269|PubMed:3191148, ECO:0007744|PDB:2Z73, ECO:0007744|PDB:4WW3 |
Chain | Residue | Details |
A | LYS305 |
site_id | SWS_FT_FI11 |
Number of Residues | 1 |
Details | LIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0007744|PDB:2ZIY |
Chain | Residue | Details |
A | CYS336 |
site_id | SWS_FT_FI12 |
Number of Residues | 1 |
Details | LIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:18463093, ECO:0000269|PubMed:18480818, ECO:0007744|PDB:2ZIY |
Chain | Residue | Details |
A | CYS337 |
site_id | SWS_FT_FI13 |
Number of Residues | 1 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:18463093 |
Chain | Residue | Details |
A | ASN8 |