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2REX

Crystal structure of the effector domain of PLXNB1 bound with Rnd1 GTPase

Functional Information from GO Data
ChainGOidnamespacecontents
A0017154molecular_functionsemaphorin receptor activity
A0071526biological_processsemaphorin-plexin signaling pathway
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0007264biological_processsmall GTPase-mediated signal transduction
C0017154molecular_functionsemaphorin receptor activity
C0071526biological_processsemaphorin-plexin signaling pathway
D0003924molecular_functionGTPase activity
D0005525molecular_functionGTP binding
D0007264biological_processsmall GTPase-mediated signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 550
ChainResidue
BTHR27
BTHR45
BGNP500
BHOH567
BHOH581

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 551
ChainResidue
BHOH566
CGLU1763
BTYR38
BGLU40
BHOH564
BHOH565

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D 550
ChainResidue
DTHR27
DTHR45
DGNP500
DHOH568
DHOH590

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 551
ChainResidue
AGLU1763
DTYR38
DGLU40
DHOH582
DHOH583
DHOH584

site_idAC5
Number of Residues27
DetailsBINDING SITE FOR RESIDUE GNP B 500
ChainResidue
BVAL22
BGLN23
BCYS24
BGLY25
BLYS26
BTHR27
BALA28
BTYR38
BPRO39
BGLU40
BTHR41
BTYR42
BTHR45
BTHR68
BSER69
BGLY70
BLYS126
BASP128
BLEU129
BSER168
BALA169
BPHE170
BMG550
BUNX557
BHOH571
BHOH577
BHOH581

site_idAC6
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GNP D 500
ChainResidue
DVAL22
DGLN23
DCYS24
DGLY25
DLYS26
DTHR27
DALA28
DTYR38
DPRO39
DGLU40
DTHR41
DTYR42
DTHR45
DTHR68
DGLY70
DLYS126
DASP128
DLEU129
DALA169
DPHE170
DMG550
DUNX553
DHOH565
DHOH568
DHOH570
DHOH572
DHOH580
DHOH590

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UNX A 1
ChainResidue
AGLY1762
AGLU1763
AVAL1811

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UNX C 2
ChainResidue
BASP36
CGLY1762
CGLU1763

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX C 3
ChainResidue
CILE1816

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX B 552
ChainResidue
BTHR45
BVAL46

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX A 5
ChainResidue
ALEU1815
AILE1816

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 553
ChainResidue
BASN49

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE UNX B 554
ChainResidue
BMET29
BGLY124
BGLY167
BILE176
BILE179

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UNX C 9
ChainResidue
CILE1777
CLYS1781
CHOH1871

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX D 553
ChainResidue
DGLN23
DGNP500

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX A 11
ChainResidue
ALYS1781
AHOH1867

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 555
ChainResidue
BGLN23

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE UNX B 556
ChainResidue
BVAL32
BLEU33
BASP36
BGLU173
BHIS177

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UNX B 557
ChainResidue
BTYR38
BGNP500
CGLY1844

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 558
ChainResidue
BTYR74

site_idCC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 559
ChainResidue
BCYS153

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX B 560
ChainResidue
BSER134
BMET137

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX B 561
ChainResidue
BGLU173
BLYS174

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX D 554
ChainResidue
DVAL46

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX C 20
ChainResidue
CLEU1836
CVAL1841

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX D 556
ChainResidue
AGLY1844
DTYR38

site_idCC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX D 559
ChainResidue
DASN49
DTHR51

site_idDC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX D 560
ChainResidue
DASN49

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX C 28
ChainResidue
CLYS1770
CGLN1787

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX D 561
ChainResidue
DSER148
DTYR149

site_idDC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX A 30
ChainResidue
AASP1821
ASER1824

Functional Information from PROSITE/UniProt
site_idPS00213
Number of Residues13
DetailsLIPOCALIN Lipocalin signature. DVTs.EVQGLWRRL
ChainResidueDetails
AASP1821-LEU1833

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:19843518, ECO:0007744|PDB:2CLS
ChainResidueDetails
BGLN23
DALA169
BTYR38
BASP67
BCYS125
BALA169
DGLN23
DTYR38
DASP67
DCYS125

218853

数据于2024-04-24公开中

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