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2C39

RNase PH core of the archaeal exosome in complex with ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000177cellular_componentcytoplasmic exosome (RNase complex)
A0000178cellular_componentexosome (RNase complex)
A0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006401biological_processRNA catabolic process
A0016075biological_processrRNA catabolic process
A0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
A0034473biological_processU1 snRNA 3'-end processing
A0034475biological_processU4 snRNA 3'-end processing
A0034476biological_processU5 snRNA 3'-end processing
A0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
A0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
B0000175molecular_function3'-5'-RNA exonuclease activity
B0000177cellular_componentcytoplasmic exosome (RNase complex)
B0000178cellular_componentexosome (RNase complex)
B0004518molecular_functionnuclease activity
B0004527molecular_functionexonuclease activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006401biological_processRNA catabolic process
B0016075biological_processrRNA catabolic process
B0016787molecular_functionhydrolase activity
B0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
B0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
B0034475biological_processU4 snRNA 3'-end processing
B0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
C0000177cellular_componentcytoplasmic exosome (RNase complex)
C0000178cellular_componentexosome (RNase complex)
C0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0006401biological_processRNA catabolic process
C0016075biological_processrRNA catabolic process
C0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
C0034473biological_processU1 snRNA 3'-end processing
C0034475biological_processU4 snRNA 3'-end processing
C0034476biological_processU5 snRNA 3'-end processing
C0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
C0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
D0000175molecular_function3'-5'-RNA exonuclease activity
D0000177cellular_componentcytoplasmic exosome (RNase complex)
D0000178cellular_componentexosome (RNase complex)
D0004518molecular_functionnuclease activity
D0004527molecular_functionexonuclease activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0006401biological_processRNA catabolic process
D0016075biological_processrRNA catabolic process
D0016787molecular_functionhydrolase activity
D0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
D0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
D0034475biological_processU4 snRNA 3'-end processing
D0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
E0000177cellular_componentcytoplasmic exosome (RNase complex)
E0000178cellular_componentexosome (RNase complex)
E0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0006401biological_processRNA catabolic process
E0016075biological_processrRNA catabolic process
E0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
E0034473biological_processU1 snRNA 3'-end processing
E0034475biological_processU4 snRNA 3'-end processing
E0034476biological_processU5 snRNA 3'-end processing
E0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
E0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
F0000175molecular_function3'-5'-RNA exonuclease activity
F0000177cellular_componentcytoplasmic exosome (RNase complex)
F0000178cellular_componentexosome (RNase complex)
F0004518molecular_functionnuclease activity
F0004527molecular_functionexonuclease activity
F0005515molecular_functionprotein binding
F0005737cellular_componentcytoplasm
F0006401biological_processRNA catabolic process
F0016075biological_processrRNA catabolic process
F0016787molecular_functionhydrolase activity
F0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
F0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
F0034475biological_processU4 snRNA 3'-end processing
F0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
G0000177cellular_componentcytoplasmic exosome (RNase complex)
G0000178cellular_componentexosome (RNase complex)
G0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0006401biological_processRNA catabolic process
G0016075biological_processrRNA catabolic process
G0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
G0034473biological_processU1 snRNA 3'-end processing
G0034475biological_processU4 snRNA 3'-end processing
G0034476biological_processU5 snRNA 3'-end processing
G0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
G0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
H0000175molecular_function3'-5'-RNA exonuclease activity
H0000177cellular_componentcytoplasmic exosome (RNase complex)
H0000178cellular_componentexosome (RNase complex)
H0004518molecular_functionnuclease activity
H0004527molecular_functionexonuclease activity
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0006401biological_processRNA catabolic process
H0016075biological_processrRNA catabolic process
H0016787molecular_functionhydrolase activity
H0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
H0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
H0034475biological_processU4 snRNA 3'-end processing
H0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
I0000177cellular_componentcytoplasmic exosome (RNase complex)
I0000178cellular_componentexosome (RNase complex)
I0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
I0005515molecular_functionprotein binding
I0005737cellular_componentcytoplasm
I0006401biological_processRNA catabolic process
I0016075biological_processrRNA catabolic process
I0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
I0034473biological_processU1 snRNA 3'-end processing
I0034475biological_processU4 snRNA 3'-end processing
I0034476biological_processU5 snRNA 3'-end processing
I0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
I0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
J0000175molecular_function3'-5'-RNA exonuclease activity
J0000177cellular_componentcytoplasmic exosome (RNase complex)
J0000178cellular_componentexosome (RNase complex)
J0004518molecular_functionnuclease activity
J0004527molecular_functionexonuclease activity
J0005515molecular_functionprotein binding
J0005737cellular_componentcytoplasm
J0006401biological_processRNA catabolic process
J0016075biological_processrRNA catabolic process
J0016787molecular_functionhydrolase activity
J0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
J0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
J0034475biological_processU4 snRNA 3'-end processing
J0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
K0000177cellular_componentcytoplasmic exosome (RNase complex)
K0000178cellular_componentexosome (RNase complex)
K0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K0005515molecular_functionprotein binding
K0005737cellular_componentcytoplasm
K0006401biological_processRNA catabolic process
K0016075biological_processrRNA catabolic process
K0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
K0034473biological_processU1 snRNA 3'-end processing
K0034475biological_processU4 snRNA 3'-end processing
K0034476biological_processU5 snRNA 3'-end processing
K0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
K0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
L0000175molecular_function3'-5'-RNA exonuclease activity
L0000177cellular_componentcytoplasmic exosome (RNase complex)
L0000178cellular_componentexosome (RNase complex)
L0004518molecular_functionnuclease activity
L0004527molecular_functionexonuclease activity
L0005515molecular_functionprotein binding
L0005737cellular_componentcytoplasm
L0006401biological_processRNA catabolic process
L0016075biological_processrRNA catabolic process
L0016787molecular_functionhydrolase activity
L0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
L0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
L0034475biological_processU4 snRNA 3'-end processing
L0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
M0000177cellular_componentcytoplasmic exosome (RNase complex)
M0000178cellular_componentexosome (RNase complex)
M0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0006401biological_processRNA catabolic process
M0016075biological_processrRNA catabolic process
M0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
M0034473biological_processU1 snRNA 3'-end processing
M0034475biological_processU4 snRNA 3'-end processing
M0034476biological_processU5 snRNA 3'-end processing
M0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
M0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
N0000175molecular_function3'-5'-RNA exonuclease activity
N0000177cellular_componentcytoplasmic exosome (RNase complex)
N0000178cellular_componentexosome (RNase complex)
N0004518molecular_functionnuclease activity
N0004527molecular_functionexonuclease activity
N0005515molecular_functionprotein binding
N0005737cellular_componentcytoplasm
N0006401biological_processRNA catabolic process
N0016075biological_processrRNA catabolic process
N0016787molecular_functionhydrolase activity
N0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
N0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
N0034475biological_processU4 snRNA 3'-end processing
N0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
O0000177cellular_componentcytoplasmic exosome (RNase complex)
O0000178cellular_componentexosome (RNase complex)
O0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0006401biological_processRNA catabolic process
O0016075biological_processrRNA catabolic process
O0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
O0034473biological_processU1 snRNA 3'-end processing
O0034475biological_processU4 snRNA 3'-end processing
O0034476biological_processU5 snRNA 3'-end processing
O0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
O0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
P0000175molecular_function3'-5'-RNA exonuclease activity
P0000177cellular_componentcytoplasmic exosome (RNase complex)
P0000178cellular_componentexosome (RNase complex)
P0004518molecular_functionnuclease activity
P0004527molecular_functionexonuclease activity
P0005515molecular_functionprotein binding
P0005737cellular_componentcytoplasm
P0006401biological_processRNA catabolic process
P0016075biological_processrRNA catabolic process
P0016787molecular_functionhydrolase activity
P0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
P0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
P0034475biological_processU4 snRNA 3'-end processing
P0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
Q0000177cellular_componentcytoplasmic exosome (RNase complex)
Q0000178cellular_componentexosome (RNase complex)
Q0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Q0005515molecular_functionprotein binding
Q0005737cellular_componentcytoplasm
Q0006401biological_processRNA catabolic process
Q0016075biological_processrRNA catabolic process
Q0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
Q0034473biological_processU1 snRNA 3'-end processing
Q0034475biological_processU4 snRNA 3'-end processing
Q0034476biological_processU5 snRNA 3'-end processing
Q0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
Q0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
R0000175molecular_function3'-5'-RNA exonuclease activity
R0000177cellular_componentcytoplasmic exosome (RNase complex)
R0000178cellular_componentexosome (RNase complex)
R0004518molecular_functionnuclease activity
R0004527molecular_functionexonuclease activity
R0005515molecular_functionprotein binding
R0005737cellular_componentcytoplasm
R0006401biological_processRNA catabolic process
R0016075biological_processrRNA catabolic process
R0016787molecular_functionhydrolase activity
R0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
R0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
R0034475biological_processU4 snRNA 3'-end processing
R0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
S0000177cellular_componentcytoplasmic exosome (RNase complex)
S0000178cellular_componentexosome (RNase complex)
S0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
S0005515molecular_functionprotein binding
S0005737cellular_componentcytoplasm
S0006401biological_processRNA catabolic process
S0016075biological_processrRNA catabolic process
S0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
S0034473biological_processU1 snRNA 3'-end processing
S0034475biological_processU4 snRNA 3'-end processing
S0034476biological_processU5 snRNA 3'-end processing
S0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
S0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
T0000175molecular_function3'-5'-RNA exonuclease activity
T0000177cellular_componentcytoplasmic exosome (RNase complex)
T0000178cellular_componentexosome (RNase complex)
T0004518molecular_functionnuclease activity
T0004527molecular_functionexonuclease activity
T0005515molecular_functionprotein binding
T0005737cellular_componentcytoplasm
T0006401biological_processRNA catabolic process
T0016075biological_processrRNA catabolic process
T0016787molecular_functionhydrolase activity
T0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
T0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
T0034475biological_processU4 snRNA 3'-end processing
T0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
U0000177cellular_componentcytoplasmic exosome (RNase complex)
U0000178cellular_componentexosome (RNase complex)
U0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
U0005515molecular_functionprotein binding
U0005737cellular_componentcytoplasm
U0006401biological_processRNA catabolic process
U0016075biological_processrRNA catabolic process
U0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
U0034473biological_processU1 snRNA 3'-end processing
U0034475biological_processU4 snRNA 3'-end processing
U0034476biological_processU5 snRNA 3'-end processing
U0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
U0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
V0000175molecular_function3'-5'-RNA exonuclease activity
V0000177cellular_componentcytoplasmic exosome (RNase complex)
V0000178cellular_componentexosome (RNase complex)
V0004518molecular_functionnuclease activity
V0004527molecular_functionexonuclease activity
V0005515molecular_functionprotein binding
V0005737cellular_componentcytoplasm
V0006401biological_processRNA catabolic process
V0016075biological_processrRNA catabolic process
V0016787molecular_functionhydrolase activity
V0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
V0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
V0034475biological_processU4 snRNA 3'-end processing
V0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
W0000177cellular_componentcytoplasmic exosome (RNase complex)
W0000178cellular_componentexosome (RNase complex)
W0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
W0005515molecular_functionprotein binding
W0005737cellular_componentcytoplasm
W0006401biological_processRNA catabolic process
W0016075biological_processrRNA catabolic process
W0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
W0034473biological_processU1 snRNA 3'-end processing
W0034475biological_processU4 snRNA 3'-end processing
W0034476biological_processU5 snRNA 3'-end processing
W0043928biological_processobsolete exonucleolytic catabolism of deadenylated mRNA
W0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
X0000175molecular_function3'-5'-RNA exonuclease activity
X0000177cellular_componentcytoplasmic exosome (RNase complex)
X0000178cellular_componentexosome (RNase complex)
X0004518molecular_functionnuclease activity
X0004527molecular_functionexonuclease activity
X0005515molecular_functionprotein binding
X0005737cellular_componentcytoplasm
X0006401biological_processRNA catabolic process
X0016075biological_processrRNA catabolic process
X0016787molecular_functionhydrolase activity
X0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
X0034427biological_processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
X0034475biological_processU4 snRNA 3'-end processing
X0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ADP B 404
ChainResidue
BARG99
BALA134
BASP135
BALA136
BGLY137
BSER138
BARG139
BASP182

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ADP D 404
ChainResidue
DARG99
DALA134
DASP135
DALA136
DGLY137
DSER138
DARG139
DGLU179
DASP182
DASP188
DTHR88

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ADP F 404
ChainResidue
FARG99
FALA134
FASP135
FALA136
FGLY137
FSER138
FARG139
FGLU179
FASP182
FASP188

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ADP H 404
ChainResidue
HTHR88
HARG99
HALA134
HALA136
HGLY137
HSER138
HARG139
HASP182
HASP188

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ADP J 404
ChainResidue
JARG99
JALA136
JGLY137
JSER138
JARG139
JASP182
JASP188

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ADP L 404
ChainResidue
DARG2
LMET83
LTHR88
LARG99
LALA134
LASP135
LALA136
LGLY137
LSER138
LARG139
LGLU179
LASP182
LASP188

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ADP N 404
ChainResidue
NTHR88
NARG99
NALA134
NALA136
NGLY137
NSER138
NARG139
NASP182

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ADP P 404
ChainResidue
PARG2
PTHR88
PARG99
PALA134
PALA136
PGLY137
PSER138
PARG139
PASP182
PASP188

site_idAC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ADP R 404
ChainResidue
RTHR88
RARG99
RALA134
RALA136
RGLY137
RSER138
RARG139
RASP182
RASP188
TMET1
TARG2

site_idBC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ADP T 404
ChainResidue
TASP182
TASP188
RMET1
RARG2
TTHR88
TARG99
TLEU103
TALA134
TASP135
TALA136
TGLY137
TSER138
TARG139
TGLU179

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ADP V 404
ChainResidue
VARG99
VALA134
VALA136
VGLY137
VSER138
VARG139
VGLU179
VASP182

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ADP X 404
ChainResidue
XTHR88
XARG99
XALA136
XGLY137
XSER138
XARG139
XASP182
XASP188

218853

數據於2024-04-24公開中

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