1W85
The crystal structure of pyruvate dehydrogenase E1 bound to the peripheral subunit binding domain of E2
GO(遺伝子オントロジー)由来の情報
鎖名 | GO(遺伝子オントロジー)id | 名前空間 | 内容 |
A | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
A | 0005515 | molecular_function | protein binding |
A | 0009083 | biological_process | branched-chain amino acid catabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
B | 0003824 | molecular_function | catalytic activity |
B | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
B | 0005515 | molecular_function | protein binding |
B | 0016491 | molecular_function | oxidoreductase activity |
C | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
C | 0005515 | molecular_function | protein binding |
C | 0009083 | biological_process | branched-chain amino acid catabolic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
D | 0003824 | molecular_function | catalytic activity |
D | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
D | 0005515 | molecular_function | protein binding |
D | 0016491 | molecular_function | oxidoreductase activity |
E | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
E | 0005515 | molecular_function | protein binding |
E | 0009083 | biological_process | branched-chain amino acid catabolic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
F | 0003824 | molecular_function | catalytic activity |
F | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
F | 0005515 | molecular_function | protein binding |
F | 0016491 | molecular_function | oxidoreductase activity |
G | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
G | 0005515 | molecular_function | protein binding |
G | 0009083 | biological_process | branched-chain amino acid catabolic process |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
H | 0003824 | molecular_function | catalytic activity |
H | 0004739 | molecular_function | pyruvate dehydrogenase (acetyl-transferring) activity |
H | 0005515 | molecular_function | protein binding |
H | 0016491 | molecular_function | oxidoreductase activity |
I | 0016746 | molecular_function | acyltransferase activity |
J | 0016746 | molecular_function | acyltransferase activity |
PDBデータベースに由来する情報
site_id | AC1 |
残基数 | 4 |
詳細 | BINDING SITE FOR RESIDUE MG A1368 |
鎖名 | 残基 |
A | ASP173 |
A | ASN202 |
A | PHE204 |
A | TPP1370 |
site_id | AC2 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE K B1325 |
鎖名 | 残基 |
B | HOH2069 |
B | ILE112 |
B | THR113 |
B | ALA160 |
B | ASP163 |
B | ASP165 |
site_id | AC3 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE MG B1326 |
鎖名 | 残基 |
A | HOH2131 |
B | HOH2045 |
B | HOH2046 |
C | HOH2169 |
C | HOH2170 |
D | HOH2071 |
site_id | AC4 |
残基数 | 5 |
詳細 | BINDING SITE FOR RESIDUE MG C1368 |
鎖名 | 残基 |
C | ASP173 |
C | ASN202 |
C | PHE204 |
C | TPP1370 |
C | HOH2173 |
site_id | AC5 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE K D1325 |
鎖名 | 残基 |
D | ILE112 |
D | THR113 |
D | ALA160 |
D | ASP163 |
D | ASP165 |
D | HOH2087 |
site_id | AC6 |
残基数 | 5 |
詳細 | BINDING SITE FOR RESIDUE MG E1368 |
鎖名 | 残基 |
E | ASP173 |
E | ASN202 |
E | TPP1370 |
E | HOH2079 |
E | HOH2087 |
site_id | AC7 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE K F1325 |
鎖名 | 残基 |
F | ILE112 |
F | THR113 |
F | ALA160 |
F | ASP163 |
F | ASP165 |
F | HOH2060 |
site_id | AC8 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE MG F1326 |
鎖名 | 残基 |
E | HOH2083 |
E | HOH2084 |
F | HOH2045 |
G | HOH2125 |
G | HOH2127 |
H | HOH2057 |
site_id | AC9 |
残基数 | 5 |
詳細 | BINDING SITE FOR RESIDUE MG G1368 |
鎖名 | 残基 |
G | ASP173 |
G | ASN202 |
G | PHE204 |
G | TPP1370 |
G | HOH2131 |
site_id | BC1 |
残基数 | 6 |
詳細 | BINDING SITE FOR RESIDUE K H1325 |
鎖名 | 残基 |
H | ILE112 |
H | THR113 |
H | ALA160 |
H | ASP163 |
H | ASP165 |
H | HOH2072 |
site_id | BC2 |
残基数 | 25 |
詳細 | BINDING SITE FOR RESIDUE TDP A1370 |
鎖名 | 残基 |
A | TYR102 |
A | ARG103 |
A | ILE142 |
A | ILE143 |
A | ILE144 |
A | GLY172 |
A | ASP173 |
A | GLY174 |
A | GLY175 |
A | GLN178 |
A | ASN202 |
A | PHE204 |
A | ALA205 |
A | ILE206 |
A | HIS271 |
A | MG1368 |
A | HOH2163 |
A | HOH2222 |
A | HOH2223 |
A | HOH2224 |
D | GLU28 |
D | LEU57 |
D | GLU59 |
D | GLN81 |
D | PHE85 |
site_id | BC3 |
残基数 | 26 |
詳細 | BINDING SITE FOR RESIDUE TDP C1370 |
鎖名 | 残基 |
C | HIS271 |
C | MG1368 |
C | HOH2173 |
C | HOH2279 |
C | HOH2280 |
C | HOH2281 |
C | HOH2282 |
B | GLU28 |
B | LEU57 |
B | GLU59 |
B | GLN81 |
B | PHE85 |
C | TYR102 |
C | ARG103 |
C | ILE142 |
C | ILE143 |
C | ILE144 |
C | GLY172 |
C | ASP173 |
C | GLY174 |
C | GLY175 |
C | GLN178 |
C | ASN202 |
C | PHE204 |
C | ALA205 |
C | ILE206 |
site_id | BC4 |
残基数 | 20 |
詳細 | BINDING SITE FOR RESIDUE TDP E1370 |
鎖名 | 残基 |
E | TYR102 |
E | ARG103 |
E | ILE142 |
E | ILE144 |
E | GLY172 |
E | ASP173 |
E | GLY174 |
E | GLY175 |
E | GLN178 |
E | ASN202 |
E | HIS271 |
E | MG1368 |
E | HOH2087 |
E | HOH2136 |
E | HOH2137 |
H | GLU28 |
H | LEU57 |
H | GLU59 |
H | GLN81 |
H | PHE85 |
site_id | BC5 |
残基数 | 25 |
詳細 | BINDING SITE FOR RESIDUE TDP G1370 |
鎖名 | 残基 |
F | GLU28 |
F | LEU57 |
F | GLU59 |
F | GLN81 |
F | PHE85 |
G | TYR102 |
G | ARG103 |
G | ILE142 |
G | ILE144 |
G | GLY172 |
G | ASP173 |
G | GLY174 |
G | GLY175 |
G | GLN178 |
G | ASN202 |
G | PHE204 |
G | ALA205 |
G | ILE206 |
G | HIS271 |
G | MG1368 |
G | HOH2131 |
G | HOH2231 |
G | HOH2232 |
G | HOH2233 |
G | HOH2234 |
site_id | BC6 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE PEG A1369 |
鎖名 | 残基 |
A | MET160 |
A | PHE191 |
B | GLU49 |
site_id | BC7 |
残基数 | 4 |
詳細 | BINDING SITE FOR RESIDUE PEG C1369 |
鎖名 | 残基 |
C | MET160 |
C | PHE191 |
C | HOH2152 |
D | GLU49 |
site_id | BC8 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE PEG G1369 |
鎖名 | 残基 |
G | ILE109 |
G | TRP110 |
G | GLU324 |
SwissProt/UniProtに記載されている蛋白質分子機能情報
CSAにおける酵素触媒機能の情報
site_id | CSA1 |
残基数 | 3 |
詳細 | Annotated By Reference To The Literature 1dtw |
鎖名 | 残基 | 詳細 |
C | HIS271 | |
B | GLU59 | |
B | HIS128 |
site_id | CSA2 |
残基数 | 3 |
詳細 | Annotated By Reference To The Literature 1dtw |
鎖名 | 残基 | 詳細 |
A | HIS271 | |
D | GLU59 | |
D | HIS128 |
site_id | CSA3 |
残基数 | 3 |
詳細 | Annotated By Reference To The Literature 1dtw |
鎖名 | 残基 | 詳細 |
F | GLU59 | |
F | HIS128 | |
G | HIS271 |
site_id | CSA4 |
残基数 | 3 |
詳細 | Annotated By Reference To The Literature 1dtw |
鎖名 | 残基 | 詳細 |
H | GLU59 | |
H | HIS128 | |
E | HIS271 |
site_id | MCSA1 |
残基数 | 2 |
詳細 | M-CSA 106 |
鎖名 | 残基 | 詳細 |
B | SER60 | proton acceptor, proton donor |
B | SER129 | proton acceptor, proton donor |
A | ARG282 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA2 |
残基数 | 2 |
詳細 | M-CSA 106 |
鎖名 | 残基 | 詳細 |
D | SER60 | proton acceptor, proton donor |
D | SER129 | proton acceptor, proton donor |
C | ARG282 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA3 |
残基数 | 2 |
詳細 | M-CSA 106 |
鎖名 | 残基 | 詳細 |
F | SER60 | proton acceptor, proton donor |
F | SER129 | proton acceptor, proton donor |
E | ARG282 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA4 |
残基数 | 2 |
詳細 | M-CSA 106 |
鎖名 | 残基 | 詳細 |
H | SER60 | proton acceptor, proton donor |
H | SER129 | proton acceptor, proton donor |
G | ARG282 | electrostatic stabiliser, hydrogen bond donor |