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1S32

Molecular Recognition of the Nucleosomal 'Supergroove'

GO(遺伝子オントロジー)由来の情報
鎖名GO(遺伝子オントロジー)id名前空間内容
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005694cellular_componentchromosome
A0030527molecular_functionstructural constituent of chromatin
A0046982molecular_functionprotein heterodimerization activity
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0046982molecular_functionprotein heterodimerization activity
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0030527molecular_functionstructural constituent of chromatin
C0046982molecular_functionprotein heterodimerization activity
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0030527molecular_functionstructural constituent of chromatin
D0046982molecular_functionprotein heterodimerization activity
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005694cellular_componentchromosome
E0030527molecular_functionstructural constituent of chromatin
E0046982molecular_functionprotein heterodimerization activity
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0046982molecular_functionprotein heterodimerization activity
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0030527molecular_functionstructural constituent of chromatin
G0046982molecular_functionprotein heterodimerization activity
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0030527molecular_functionstructural constituent of chromatin
H0046982molecular_functionprotein heterodimerization activity
PDBデータベースに由来する情報
site_idAC1
残基数6
詳細BINDING SITE FOR RESIDUE MN E 2001
鎖名残基
DVAL1245
EASP677
EHOH3391
EHOH3393
EHOH3394
FHOH3392

site_idAC2
残基数6
詳細BINDING SITE FOR RESIDUE MN J 2002
鎖名残基
JHOH3397
JHOH3398
JHOH3399
IHOH3396
JDG246
JHOH3395

site_idAC3
残基数3
詳細BINDING SITE FOR RESIDUE MN I 2003
鎖名残基
IDG70
IDG71
IHOH3400

site_idAC4
残基数4
詳細BINDING SITE FOR RESIDUE MN I 2004
鎖名残基
IDG134
IHOH3401
IHOH3402
IHOH3403

site_idAC5
残基数2
詳細BINDING SITE FOR RESIDUE MN J 2005
鎖名残基
JDG280
JHOH3641

site_idAC6
残基数3
詳細BINDING SITE FOR RESIDUE MN I 2006
鎖名残基
IDG100
IHOH3526
IHOH3832

site_idAC7
残基数3
詳細BINDING SITE FOR RESIDUE MN I 2007
鎖名残基
IDG39
IDG40
IHOH3153

site_idAC8
残基数4
詳細BINDING SITE FOR RESIDUE MN J 2008
鎖名残基
JDT266
JDG267
JHOH3047
JHOH3411

site_idAC9
残基数1
詳細BINDING SITE FOR RESIDUE MN I 2009
鎖名残基
IDG121

site_idBC1
残基数2
詳細BINDING SITE FOR RESIDUE MN J 2010
鎖名残基
JDG217
JHOH3491

site_idBC2
残基数1
詳細BINDING SITE FOR RESIDUE MN J 2011
鎖名残基
JDG227

site_idBC3
残基数4
詳細BINDING SITE FOR RESIDUE MN I 2012
鎖名残基
IHOH3821
JHOH3295
JHOH3820
JHOH3833

site_idBC4
残基数3
詳細BINDING SITE FOR RESIDUE MN J 2013
鎖名残基
JDG185
JDG186
JHOH3499

site_idBC5
残基数3
詳細BINDING SITE FOR RESIDUE MN I 2014
鎖名残基
IDG137
IDG138
IHOH3233

site_idBC6
残基数2
詳細BINDING SITE FOR RESIDUE CL E 2015
鎖名残基
EPRO721
ELYS722

site_idBC7
残基数6
詳細BINDING SITE FOR RESIDUE CL G 2016
鎖名残基
GGLY1044
GALA1045
GGLY1046
GALA1047
HTHR1487
HSER1488

site_idBC8
残基数2
詳細BINDING SITE FOR RESIDUE CL A 2017
鎖名残基
APRO521
ALYS522

site_idBC9
残基数4
詳細BINDING SITE FOR RESIDUE CL D 2018
鎖名残基
CGLY846
CALA847
DTHR1287
DSER1288

site_idCC1
残基数5
詳細BINDING SITE FOR RESIDUE IMT I 1601
鎖名残基
IDG31
IDT32
IPYB1602
IPYB1608
IPYB1609

site_idCC2
残基数6
詳細BINDING SITE FOR RESIDUE PYB I 1602
鎖名残基
IDT32
IDG33
IIMT1601
IIMT1603
IPYB1607
IPYB1608

site_idCC3
残基数5
詳細BINDING SITE FOR RESIDUE IMT I 1603
鎖名残基
IDG33
IDT34
IDA35
IPYB1602
IPYB1604

site_idCC4
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1604
鎖名残基
IDT34
IDA35
IDT36
IIMT1603
IABU1605
IPYB1606
IHOH3243

site_idCC5
残基数5
詳細BINDING SITE FOR RESIDUE ABU I 1605
鎖名残基
IPYB1604
IPYB1606
JDA259
JDC260
JOGG1700

site_idCC6
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1606
鎖名残基
IPYB1604
IABU1605
IPYB1607
JDA259
JDC260
JDA261
JOGG1700

site_idCC7
残基数5
詳細BINDING SITE FOR RESIDUE PYB I 1607
鎖名残基
IPYB1602
IPYB1606
IPYB1608
JDC260
JDA261

site_idCC8
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1608
鎖名残基
IIMT1601
IPYB1602
IPYB1607
IPYB1609
JDA261
JDC262
JDT263

site_idCC9
残基数6
詳細BINDING SITE FOR RESIDUE PYB I 1609
鎖名残基
IDG31
IIMT1601
IPYB1608
IBAL1610
JDC262
JDT263

site_idDC1
残基数5
詳細BINDING SITE FOR RESIDUE BAL I 1610
鎖名残基
IDA30
IDG31
IPYB1609
IDIB1611
JDT263

site_idDC2
残基数5
詳細BINDING SITE FOR RESIDUE DIB I 1611
鎖名残基
IDA29
IDA30
IBAL1610
JDT265
JDT266

site_idDC3
残基数4
詳細BINDING SITE FOR RESIDUE IMT I 1621
鎖名残基
IPYB1622
IPYB1628
IPYB1629
JDT178

site_idDC4
残基数6
詳細BINDING SITE FOR RESIDUE PYB I 1622
鎖名残基
IIMT1621
IIMT1623
IPYB1627
IPYB1628
JDT178
JDG179

site_idDC5
残基数6
詳細BINDING SITE FOR RESIDUE IMT I 1623
鎖名残基
IPYB1622
IPYB1624
IPYB1627
JDG179
JDT180
JDA181

site_idDC6
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1624
鎖名残基
IDA113
IIMT1623
IABU1625
IPYB1626
JDT180
JDA181
JDT182

site_idDC7
残基数5
詳細BINDING SITE FOR RESIDUE ABU I 1625
鎖名残基
IDA113
IPYB1624
IPYB1626
JDA181
JOGG1700

site_idDC8
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1626
鎖名残基
IDA113
IDC114
IDA115
IPYB1624
IABU1625
IPYB1627
JOGG1700

site_idDC9
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1627
鎖名残基
IDC114
IDA115
IDC116
IPYB1622
IIMT1623
IPYB1626
IPYB1628

site_idEC1
残基数7
詳細BINDING SITE FOR RESIDUE PYB I 1628
鎖名残基
IDA115
IDC116
IDT117
IIMT1621
IPYB1622
IPYB1627
IPYB1629

site_idEC2
残基数8
詳細BINDING SITE FOR RESIDUE PYB I 1629
鎖名残基
GLYS1013
IDC116
IDT117
IDT118
IIMT1621
IPYB1628
IBAL1630
JDG177

site_idEC3
残基数5
詳細BINDING SITE FOR RESIDUE BAL I 1630
鎖名残基
GALA1014
IPYB1629
IDIB1631
JDA176
JDG177

site_idEC4
残基数5
詳細BINDING SITE FOR RESIDUE DIB I 1631
鎖名残基
IDT119
IDT120
IBAL1630
JDA175
JDA176

site_idEC5
残基数6
詳細BINDING SITE FOR RESIDUE OGG J 1700
鎖名残基
IDA113
IABU1605
IPYB1606
IABU1625
IPYB1626
JDA259

UniProtにおけるモチーフ・データベースPROSITEからの機能情報
site_idPS00046
残基数7
詳細HISTONE_H2A Histone H2A signature. AGLqFPV
鎖名残基詳細
CALA821-VAL827

site_idPS00047
残基数5
詳細HISTONE_H4 Histone H4 signature. GAKRH
鎖名残基詳細
BGLY14-HIS18

site_idPS00322
残基数7
詳細HISTONE_H3_1 Histone H3 signature 1. KAPRKQL
鎖名残基詳細
ALYS414-LEU420

site_idPS00357
残基数23
詳細HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
鎖名残基詳細
DARG1289-GLY1311

site_idPS00959
残基数9
詳細HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
鎖名残基詳細
APRO466-ILE474

SwissProt/UniProtに記載されている蛋白質分子機能情報
site_idSWS_FT_FI1
残基数8
詳細MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
鎖名残基詳細
DLYS1202
DLYS1209
DLYS1212
DLYS1217
HLYS1402
HLYS1409
HLYS1412
HLYS1417

site_idSWS_FT_FI2
残基数2
詳細MOD_RES: Phosphoserine => ECO:0000269|PubMed:12757711
鎖名残基詳細
DSER1211
HSER1411

site_idSWS_FT_FI3
残基数2
詳細CARBOHYD: O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807
鎖名残基詳細
DSER1309
HSER1509
GLYS1009
GLYS1095

site_idSWS_FT_FI4
残基数4
詳細CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0C1H4
鎖名残基詳細
DLYS1317
GLYS1036
HLYS1517

site_idSWS_FT_FI5
残基数4
詳細MOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P0C0S8
鎖名残基詳細
CLYS874
CLYS875
GLYS1074
GLYS1075
FLYS208
FLYS216
FLYS244
FLYS279

site_idSWS_FT_FI6
残基数2
詳細MOD_RES: N5-methylglutamine => ECO:0000250
鎖名残基詳細
CGLN904
GGLN1104
FLYS212
FLYS220

site_idSWS_FT_FI7
残基数2
詳細MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P0C0S8
鎖名残基詳細
CLYS918
GLYS1118
FLYS231
FLYS291

site_idSWS_FT_FI8
残基数8
詳細CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250
鎖名残基詳細
CLYS813
FSER247
CLYS815
CLYS919
GLYS1013
GLYS1015
GLYS1119

site_idSWS_FT_FI9
残基数4
詳細MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62805
鎖名残基詳細
BTYR51
BTYR88
FTYR251
FTYR288

site_idSWS_FT_FI10
残基数2
詳細MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P62805
鎖名残基詳細
BLYS59
ELYS664
FLYS259
ALYS427
ALYS436
ALYS464
ELYS618
ELYS623
ELYS627
ELYS636

site_idSWS_FT_FI11
残基数2
詳細MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62805
鎖名残基詳細
BLYS77
FLYS277

site_idSWS_FT_FI12
残基数2
詳細CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000250|UniProtKB:P62805
鎖名残基詳細
BLYS31
FLYS231

site_idSWS_FT_FI13
残基数4
詳細CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805
鎖名残基詳細
ALYS437
BLYS91
FLYS291

site_idSWS_FT_FI14
残基数2
詳細MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ATYR441
ETYR641

site_idSWS_FT_FI15
残基数4
詳細MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
鎖名残基詳細
ALYS456
ALYS479
ELYS656
ELYS679

site_idSWS_FT_FI16
残基数2
詳細MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ASER457
ESER657

site_idSWS_FT_FI17
残基数4
詳細MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ATHR480
ATHR507
ETHR680
ETHR707

site_idSWS_FT_FI18
残基数2
詳細MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243
鎖名残基詳細
ASER486
ESER686

site_idSWS_FT_FI19
残基数2
詳細MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ALYS515
ELYS715

site_idSWS_FT_FI20
残基数2
詳細MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ALYS522
ELYS722

site_idSWS_FT_FI21
残基数2
詳細LIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3
鎖名残基詳細
ACYS510
ECYS710

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件を2024-09-18に公開中

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