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1PM5

Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003824molecular_functioncatalytic activity
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0006974biological_processDNA damage response
A0008152biological_processmetabolic process
A0008270molecular_functionzinc ion binding
A0008534molecular_functionoxidized purine nucleobase lesion DNA N-glycosylase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
A0016829molecular_functionlyase activity
A0019104molecular_functionDNA N-glycosylase activity
A0034039molecular_function8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
A0046872molecular_functionmetal ion binding
A0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 300
ChainResidue
ACYS245
ACYS248
ACYS265
ACYS268

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1001
ChainResidue
AASP100
AGLY101
AARG16
AGLN20
ALEU81
ATHR83
AASP85

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1003
ChainResidue
AGLY259
AARG260
AHOH1193
AHOH1245
DDT8
DDT9
EDA21

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 1004
ChainResidue
ATYR58
AHIS72
AARG74
ATHR113
AGLU115
ATYR125
ALYS129
AHOH1108
AHOH1114
DDT9
DDT10

Functional Information from PROSITE/UniProt
site_idPS01242
Number of Residues25
DetailsZF_FPG_1 Zinc finger FPG-type signature. Csr..CGaeIqkikvag....RGthFCpvCQ
ChainResidueDetails
ACYS245-GLN269

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues34
DetailsZN_FING: FPG-type
ChainResidueDetails
AVAL237-LYS271

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000305
ChainResidueDetails
APRO1

site_idSWS_FT_FI3
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
AGLU2

site_idSWS_FT_FI4
Number of Residues1
DetailsACT_SITE: Proton donor; for beta-elimination activity => ECO:0000305
ChainResidueDetails
ALYS57

site_idSWS_FT_FI5
Number of Residues1
DetailsACT_SITE: Proton donor; for delta-elimination activity => ECO:0000305
ChainResidueDetails
AGLY261

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AHIS91
AARG109

218853

數據於2024-04-24公開中

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