Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9Z44

Isoreticular co-crystal 1 with symmetrical expanded duplex (31mer) containing insert sequence CCCGGCCGGA and loaded with C-clamp domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyPIXEL
Collection date2025-06-18
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0
Spacegroup nameI 1 2 1
Unit cell lengths73.491, 127.653, 141.183
Unit cell angles90.00, 91.98, 90.00
Refinement procedure
Resolution47.990 - 7.200
R-factor0.287
Rwork0.280
R-free0.34530
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.588
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.2_5419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.99047.990
High resolution limit [Å]7.2007.200
Rmerge2.0212.021
Rmeas2.8292.829
Rpim1.9761.976
Number of reflections18951895
<I/σ(I)>0.36
Completeness [%]98.098.03
Redundancy1.51.5
CC(1/2)0.4660.466
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529860mM magnesium acetate, 1.8M lithium sulfate, 50mM MES pH 6.5.The crystal was crosslinked with 50 mg/mL EDC overnight, and then looped into a solution of 50mM potassium chloride, 4mM calcium chloride, 10% glycerol, and 10mM Tris hydrochloride for 1 hour. The drop was then supplemented with 90 micromolar C-clamp

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon