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9YPI

MboA HDO apo structure

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-2
Synchrotron siteNSLS-II
Beamline17-ID-2
Temperature [K]100
Detector technologyPIXEL
Collection date2025-01-31
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979
Spacegroup nameP 43 21 2
Unit cell lengths156.420, 156.420, 157.631
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.610 - 2.490
R-factor0.1878
Rwork0.187
R-free0.22130
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.513
Data reduction softwareautoPROC (1.0.5)
Data scaling softwareAimless (0.8.2)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (2.0_5761)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.6102.550
High resolution limit [Å]2.4902.490
Rmerge0.3542.495
Rmeas0.3672.588
Rpim0.0970.686
Number of reflections654714774
<I/σ(I)>111.8
Completeness [%]95.0100
Redundancy26.9827.39
CC(1/2)0.9970.505
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.6298MboA crystals were prepared via the hanging drop vapor diffusion method. Hanging drops were prepared by combining equal volumes of MboA (18 mg per mL) protein solution and reservoir solution (1.2 M lithium sulfate and 0.1 M sodium acetate, pH 4.6) for a total drop volume of 2 uL. Crystals typically grew in about approximately 1 to 2 weeks. Crystals were cryoprotected with the addition of 0.75 uL of 40% glycerol in 0.1 M sodium acetate, pH 4.6 and flash frozen in LN2

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PDB entries from 2026-05-20

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