9YBV

ARID1B ARID bound to compound A-4 (N-[(5-methylthiophen-2-yl)methyl]-7,8-dihydro-5H-pyrano[4,3-b]pyridin-3-amine)

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	CLSI BEAMLINE 08ID-1
Synchrotron site	CLSI
Beamline	08ID-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-08-19
Detector	DECTRIS EIGER X 9M
Wavelength(s)	0.953725
Spacegroup name	P 65
Unit cell lengths	68.759, 68.759, 45.712
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	36.260 - 1.200
R-factor	0.1903
Rwork	0.189
R-free	0.20630
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	0.892
Data reduction software	autoPROC
Data scaling software	XSCALE
Phasing software	PHASER
Refinement software	PHENIX (1.20.1_4487)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	36.260	1.240
High resolution limit [Å]	1.200	1.200
Rmerge	0.056	1.470
Rpim	0.013
Number of reflections	38552	3844
<I/σ(I)>	27.4	2.2
Completeness [%]	100.0	99.97
Redundancy	20.14	19.06
CC(1/2)	0.999	0.859

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	6.5	277	1.5 M sodium citrate, pH 6.5, 0.033% w/v 4-nitrobenzoic acid, 0.033% w/v 5-sulfosalicylic acid dihydrate, 0.033% w/v naphthalene-1,3,6-trisulfonic acid trisodium salt hydrate, 0.002 M HEPES sodium, pH 6.8