9Y4Q

Crystal structure of the human DCAF1 WDR domain in complex with OICR-40102

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	CLSI BEAMLINE 08ID-1
Synchrotron site	CLSI
Beamline	08ID-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-07-28
Detector	DECTRIS EIGER X 9M
Wavelength(s)	0.9537
Spacegroup name	P 1 21 1
Unit cell lengths	48.692, 88.192, 73.099
Unit cell angles	90.00, 97.47, 90.00

Refinement procedure

Resolution	38.000 - 1.480
R-factor	0.15955
Rwork	0.158
R-free	0.19321
Structure solution method	FOURIER SYNTHESIS
RMSD bond length	0.005
RMSD bond angle	1.374
Data scaling software	HKL-3000
Phasing software	REFMAC
Refinement software	REFMAC (5.8.0430)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	1.510
High resolution limit [Å]	1.480	4.020	1.480
Rmerge	0.058	0.032	0.794
Rmeas	0.064	0.035	0.883
Rpim	0.027	0.014	0.380
Total number of observations	574878
Number of reflections	103575	5274	5163
<I/σ(I)>	10.1
Completeness [%]	99.9	99.4	99.9
Redundancy	5.6	5.9	5.3
CC(1/2)	0.998	0.999	0.718

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7	291	3.2 M NaCl, 0.1 M Bis-Tris Propane pH 7.0