9Y1Z

Crystal structure of NRas-G12D in complex with GDP and compound 5

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 22-ID
Synchrotron site	APS
Beamline	22-ID
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-03-03
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.97
Spacegroup name	P 1 21 1
Unit cell lengths	42.506, 46.355, 79.191
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	42.510 - 1.920
R-factor	0.2176
Rwork	0.214
R-free	0.28180
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.009
RMSD bond angle	1.177
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX ((1.21.2_5419: ???))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	42.510	2.010
High resolution limit [Å]	1.920	1.920
Number of reflections	26048	3125
<I/σ(I)>	1.65
Completeness [%]	97.5
Redundancy	3.3	2.1
CC(1/2)	0.945	0.100

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	5.5	298	0.1M Sodium Citrate pH5.5, 0.1M MgCl2, 16-22% Peg 4000