Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9VYB

Antitoxin Phd

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]273
Detector technologyPIXEL
Collection date2024-09-05
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.98
Spacegroup nameP 21 21 21
Unit cell lengths44.370, 47.760, 48.350
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution26.980 - 2.120
R-factor0.23561
Rwork0.234
R-free0.26946
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.637
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]26.9802.180
High resolution limit [Å]2.1202.120
Number of reflections6172494
<I/σ(I)>25.88.1
Completeness [%]99.9
Redundancy12.8
CC(1/2)0.9900.978
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.12M Ethylene glycols, 0.1M Buffer System 3, 30 % v/v Precipitant Mix 2

257179

PDB entries from 2026-07-29

PDB statisticsPDBj update infoContact PDBjnumon