Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9VMF

Structure of endoperoxide isomerase NvfE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]100
Detector technologyPIXEL
Collection date2019-02-18
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1
Spacegroup nameP 21 21 21
Unit cell lengths66.428, 97.978, 99.131
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.570 - 2.330
R-factor0.1843
Rwork0.181
R-free0.22870
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.851
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.5702.410
High resolution limit [Å]2.3302.330
Rmerge0.0980.798
Number of reflections284502685
<I/σ(I)>132.2
Completeness [%]99.797.3
Redundancy6.76.8
CC(1/2)0.9980.758
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293200mM sodium malonate (pH 4.0), 8% (w/v) PEG 3350, 8% (v/v) Jeffamine-M600

256789

PDB entries from 2026-07-22

PDB statisticsPDBj update infoContact PDBjnumon