9VGA

Crystal structure of Phaeodactylibacter sp. phosphoglucomutase in complex with manganese ion

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SSRF BEAMLINE BL19U1
Synchrotron site	SSRF
Beamline	BL19U1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2025-04-04
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.97861
Spacegroup name	C 2 2 21
Unit cell lengths	61.657, 101.706, 168.361
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	52.730 - 1.820
R-factor	0.2521
Rwork	0.249
R-free	0.30970
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.007
RMSD bond angle	0.871
Data reduction software	HKL-2000
Data scaling software	HKL-2000
Phasing software	PHASER
Refinement software	PHENIX (1.14_3260)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	52.730	1.920
High resolution limit [Å]	1.820	1.820
Number of reflections	45398	4969
<I/σ(I)>	5.1
Completeness [%]	94.9
Redundancy	4.8
CC(1/2)	0.953	0.693

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		289.15	0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 6.0 26% v/v Polyethylene glycol 400 1 mM Mn2+